Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5855
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.26 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   4.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   5.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.9  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    25   9.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   9.9  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   9.9  

>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 380 RWPLACTGPARPRRSHYLQSHEVSYSK 300
           R+  + TGP R RR HYLQ +++  SK
Sbjct: 126 RYAYSQTGPLRHRRLHYLQDNKIRPSK 152


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 498 SAVPQYRPQIRS**AAQ*DEPPPP 569
           SA P Y+P  R   A+  D+PPPP
Sbjct: 158 SATPIYKPNQRRIAASVPDKPPPP 181


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 209 HLLEVTEQQQETLVPVVSASTPPRKPDEQ 295
           HLLE     +   +P +S   PPR  D Q
Sbjct: 547 HLLEERIHSKRANIPTISVIPPPRSMDAQ 575


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +3

Query: 492 PYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPR 629
           P S VP Y    R       + PPPP  SS S+T R    PS  PR
Sbjct: 402 PTSNVPAYSTPARPT-----ESPPPPPISSSSTTPRPDDKPSLPPR 442


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 120 LKHECNEVSSSSDCINVLYRDL 55
           L H+CN   S + CI+ +Y+ L
Sbjct: 362 LGHKCNSCHSYNTCISSIYKPL 383


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 461 LADVTHAERVALLSCPPIPAADKELISGAVRRAAAAISELR 583
           + DV+  + +A   CP IPA DK+    A+     +I EL+
Sbjct: 132 IIDVSTIKELAKRWCPDIPAYDKKGDHRALSDILESIGELQ 172


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 158 ICHKDNDPQENVINERTHLLEVTE-QQQETLVP 253
           +CH+D  PQ  +++ +T +L++ +    + LVP
Sbjct: 146 VCHRDIKPQNLLVDYKTGILKLCDFGSAKVLVP 178


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +2

Query: 236 QETLVPVVSASTPPRKPDEQTALNRILHETANNVIDVGALGPYTLE 373
           Q+T    V AST      E  A  +  HE       +G   P++LE
Sbjct: 273 QDTFFLKVPASTDKLPDPEYVARVKATHENGGETKGIGYRAPFSLE 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,578
Number of Sequences: 5004
Number of extensions: 39116
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)