Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5855
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    36   0.035
AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical...    31   0.99 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    28   5.3  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    27   9.2  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 127 KNSRNGXXXXXXPQRQRPTGERYKRKDTSTRSNGAATGDAGTCGISVHTTE 279
           + S+N       PQ+ RP G  YK K    RSNG+ATG +     +++T E
Sbjct: 530 ETSKNSIKYPYVPQQSRPRGY-YKMKKLPARSNGSATGSSNDELSAIYTHE 579


>AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.16 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 173 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHETANNV 337
           NDPQ   I E+ H      +  E  +  +  + P  K +EQT ++  L E   N+
Sbjct: 93  NDPQSAKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLMENLANL 147


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +3

Query: 465 PTSPTPSEWPY--SAVP---QYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPR 629
           PTS TPS+ P   ++VP     +P            PP P +  G   G   + P G+ R
Sbjct: 684 PTSSTPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGAMR 743

Query: 630 AGAGAVPPLGS 662
             AG  PP G+
Sbjct: 744 PPAGFAPPPGA 754


>U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical
           protein F38E9.4 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 173 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHE 322
           NDPQ   I E+ H      +  E  +  +  + P  K +EQT ++  L E
Sbjct: 93  NDPQSVKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLME 142


>Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical
           protein K02E11.10 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 652 GGTAPAPALGDPEGHHQVLPVLDPELRYGGGG 557
           G  APAPA G   G +Q  P L   L  G GG
Sbjct: 103 GAPAPAPAFGGLGGGYQAAPALGGGLGGGLGG 134


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 173 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTA 301
           N    N  NE T   E T   Q    PV + +T P+KPD   A
Sbjct: 259 NPTTSNQKNETTD--EATSSPQSAKTPVTNPTTSPQKPDTTEA 299


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 173 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHETANNVID 343
           N P E  I E+T L   T   Q T +      TP     + T+  +I+H   N V++
Sbjct: 496 NPPHEGFIEEKTLLTPSTNNAQTTQID--RNLTPKTTTLKATSRTKIIHVGPNGVVE 550


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 477  TPSEWPYSAVPQYR--PQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGAVP 650
            TP    Y+  PQY+  P ++S   +    PPPP  ++ S+  + +       RA A  + 
Sbjct: 1751 TPVSGQYTQAPQYQQPPPMQSYGISSGPPPPPPAAATSSAYSQAFQAGPTMGRA-AAPIS 1809

Query: 651  PLGSLLI 671
            P+ + ++
Sbjct: 1810 PISAAIV 1816


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 170  DNDPQENVINERTHLLEVTEQQQETLVPVVSASTPP 277
            D   + N    +   LEV +Q Q+++    S+STPP
Sbjct: 999  DGKRRNNTTKRKFDALEVVQQMQKSISVAQSSSTPP 1034


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 477 TPSEWPYSAVPQYR--PQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGAVP 650
           TP    Y+  PQY+  P ++S   +    PPPP  ++ S+  + +       RA A  + 
Sbjct: 376 TPVSGQYTQAPQYQQPPPMQSYGISSGPPPPPPAAATSSAYSQAFQAGPTMGRA-AAPIS 434

Query: 651 PLGSLLI 671
           P+ + ++
Sbjct: 435 PISAAIV 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,520,772
Number of Sequences: 27780
Number of extensions: 244860
Number of successful extensions: 1021
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)