Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5855
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 649 GTAPAPALGDPEGHHQVLPVLDPELRYGGGGSSHCAAYQLLICGRY 512
           GT P P +    G   +  + +PE+R    GS +    QL+  G Y
Sbjct: 336 GTPPPPLVWRRNGA-DLETLNEPEIRVFNDGSLYLTKVQLIHAGNY 380


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 9/28 (32%)
 Frame = -3

Query: 526 ICGRYWGTAE*---------GHSLGVGD 470
           +CGR++G  +          GHS+G+GD
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGD 152


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 212 LLEVTEQQQETLVPVVSASTPPRKP 286
           L EV E +     P VS S+PPR+P
Sbjct: 120 LCEVPESRDGP--PSVSLSSPPREP 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,712
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)