Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5854
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   5.8  
03_01_0354 + 2785998-2787623                                           28   7.6  
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609...    28   7.6  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 162  NFIETKLYFTYILTCRMFLSKVTCDVC 242
            NF+E   YF Y  TC + +SK  C VC
Sbjct: 1603 NFMEQHWYFCY--TCDLTVSKGCCSVC 1627


>03_01_0354 + 2785998-2787623
          Length = 541

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 513 IPYIQISYPFHRIVFLIIFGYMAFFFSF 596
           IPY   + P ++++F+ ++G+  FF +F
Sbjct: 392 IPYHHWTMPGNQVIFVFLYGFTFFFANF 419


>01_03_0050 +
           11959421-11959736,11959892-11959960,11960641-11960979,
           11961090-11961152,11962472-11962962,11963773-11964441
          Length = 648

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 369 SLFKH-HIRYSSSSLRYTRKRSF-VDTTEHQCFKKKKSYNITSQ 244
           SL  H HI+ S   LR T+KRSF      +   KKKK+ NI S+
Sbjct: 324 SLVDHAHIKVSEKRLR-TQKRSFSYKKDRYSKSKKKKNLNILSK 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,470
Number of Sequences: 37544
Number of extensions: 195819
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)