Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5852
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 36 0.005
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 35 0.010
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 35 0.013
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 33 0.029
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.038
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 32 0.067
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 30 0.27
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 30 0.36
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 29 0.47
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 28 1.1
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 28 1.1
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 27 1.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.9
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 27 1.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 7.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.7
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 7.7
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 147 TAVITGASAGIGTAICVVLADAGMRVVGLARRPQLVDVSHATLL 16
T +ITG+S G+G A+ V G V+ +R P + + H+ LL
Sbjct: 7 TVLITGSSKGLGYALVKVGLAQGYNVIACSRAPDTITIEHSKLL 50
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 35.1 bits (77), Expect = 0.010
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 156 QGKTAVITGASAGIGTAICVVLADAGMRVVGL 61
+G+ +ITGA+ GIG +C + + G RV G+
Sbjct: 4 EGRVVLITGAAGGIGKVLCKMFTELGDRVAGI 35
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -2
Query: 156 QGKTAVITGASAGIGTAICVVLADAG 79
+GK AV+ G + GIG AIC V A+AG
Sbjct: 20 KGKNAVVFGGARGIGHAICSVFAEAG 45
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -2
Query: 168 MQRWQGKTAVITGASAGIGTAICVVLAD-AGMRVVGLARRPQLVD 37
M R GKT +ITGAS+GIG + +A A ++++ ARR V+
Sbjct: 1 MSRLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVE 45
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 33.1 bits (72), Expect = 0.038
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2
Query: 171 SMQRWQGKTAVITGASAGIGTAICVVLADAGMRV 70
SM +GKT +ITG S GIG +I A AG V
Sbjct: 3 SMFSLKGKTTLITGGSGGIGFSIAKAFAAAGSNV 36
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 32.3 bits (70), Expect = 0.067
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 156 QGKTAVITGASAGIGTAICVVLADAGMRVVGLARRPQLVDVSHATLLTFQQI 1
+G AV+TGA+ GIG LA +G VV ++R + +D L T ++
Sbjct: 56 KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELETVAKV 107
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 165 QRWQGKTAVITGASAGIGTAICVVLADAGMRVVGLAR 55
++ G ++TG S+GIG + LA G +VV L R
Sbjct: 71 RKMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLR 107
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.36
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 156 QGKTAVITGASAGIGTAICVVLADAGMRVV 67
+GK V+ GA+ GIG +I A AG V+
Sbjct: 20 KGKNCVVFGAAKGIGFSIATAFAQAGGNVI 49
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 153 GKTAVITGASAGIGTAICVVLADAGMRV 70
GK A++TG+S GIG + LA G +V
Sbjct: 42 GKVALVTGSSGGIGYVTALELARKGAKV 69
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 138 ITGASAGIGTAICVVLADAGMRVVGLAR 55
+TGA+ IG+ I L +AG VVGL R
Sbjct: 5 VTGAAGFIGSEIVRQLLEAGHEVVGLVR 32
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 173 LTTNQHHIRSVFSNISFAYHMRIIYHITYF*YAFISFTRLYVTMLVCNG 319
L + I ++ I+F + + HIT + +F+ RL++TM C+G
Sbjct: 39 LDATKDQIETLTQEINFLIDLNSV-HITKYYASFVDGFRLWITMEYCDG 86
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 147 TAVITGASAGIGTAICVVLADAGMRVV 67
T ++TG + IG+ CVVL + G VV
Sbjct: 8 TVLVTGGAGYIGSHTCVVLLEKGYDVV 34
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 77 IPASANTTQIAVPMPALAPVITAVLP 154
+P++A + P PA+AP ++AV+P
Sbjct: 210 VPSAAEESVSTPPQPAVAPSVSAVVP 235
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 183 LVVRSMQRWQGKTAVITGASAGIGTAICVVLADA 82
++VR M+ G VI GAS G+GT V LA A
Sbjct: 156 VLVRQMKVKPGTKLVIEGASGGVGT-FAVALAKA 188
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 56 LARPTTLIPASANTTQIAVPMPALAPVITAVLPCQRCMLLTT 181
LA P TL PA+ + Q A P+P + AV+P + +T
Sbjct: 268 LASPVTL-PAANSAVQNAQPVPMTSSPAMAVVPQNKTAATST 308
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 76 HSRVRQHHADRGANASTSTSDHSS 147
H+RVR + D +++ STS+HS+
Sbjct: 118 HARVRWYPKDHQSDSEKSTSNHST 141
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 35 TSTSCGLLARPTTLIPASANTT-QIAVPMPALAPVITAV 148
T+T G + TTL+PAS + + + V PA+ V T +
Sbjct: 259 TTTYSGSVEYTTTLVPASGSVSGTVEVVEPAVGTVTTTL 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,916
Number of Sequences: 5004
Number of extensions: 33515
Number of successful extensions: 123
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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