Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5852
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   7e-05
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 165 QRWQGKTAVITGASAGIGTAICVVLADAGMRVVGLA 58
           Q W  + A++TGA++GIG  +   L   GM+V+G+A
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIA 38


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 342 PFFFKFFIRAIPANCL 389
           PFF  + +RA   NC+
Sbjct: 24  PFFTMYLVRAFCRNCI 39


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 342 PFFFKFFIRAIPANCL 389
           PFF  + +RA   NC+
Sbjct: 472 PFFTMYLVRAFCRNCI 487


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 404 VADLTQTVGWYGSNKEFKKKGGQNHVQRFRY 312
           ++D  QT GW GSN     +   N   R RY
Sbjct: 253 LSDEDQTKGWDGSNMVEGNESDHND-GRLRY 282


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  HADRGANASTSTSDHSS 147
           H++  ANA++STS   S
Sbjct: 747 HSEASANANSSTSSEES 763


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,981
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)