Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5850
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   3.6  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    29   3.6  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   3.6  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   8.4  

>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 567 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 388
           PQ Q   + S +   F ++++V C    AR V  +I       + +  AT   +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783

Query: 387 ND 382
           +D
Sbjct: 784 HD 785


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 567 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 388
           PQ Q   + S +   F ++++V C    AR V  +I       + +  AT   +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783

Query: 387 ND 382
           +D
Sbjct: 784 HD 785


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 567 PQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRI 388
           PQ Q   + S +   F ++++V C    AR V  +I       + +  AT   +SV N +
Sbjct: 728 PQVQERVIQSATKCAFATSQLVAC----ARVVAPTIDNNACQQQLSTAATEVTQSVNNLL 783

Query: 387 ND 382
           +D
Sbjct: 784 HD 785


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 550 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 461
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 550 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 461
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 165


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 209 PTTPTAVKPPRVGPKTSLNHS-IGSSD 132
           PTTP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 317 TYHTQYNTR**SFRRFPYRNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 138
           TY+   N        F + + V+T+     S+ +N         PPR GP  S   S  S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289

Query: 137 SD 132
           +D
Sbjct: 290 ND 291


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 276 AEGSLTCVVLCVICKYFIYLFIYIYACIHSIVLNFY 383
           AE SLT   + +IC Y     I I A ++SI  ++Y
Sbjct: 252 AEVSLTVTTVSMICSYLSNSMIVIAAQLNSIEYSYY 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,671
Number of Sequences: 27780
Number of extensions: 247238
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)