Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5849
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    36   0.007
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.4  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         27   2.4  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.4  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   5.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   7.3  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   7.3  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   7.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.6  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   9.6  

>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 255 LNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSV 434
           +NG++++Y N   L+    +  D+      V+ D  +F P  G  L G +N    +H+ +
Sbjct: 44  INGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGL 103

Query: 435 LV 440
           L+
Sbjct: 104 LI 105


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -2

Query: 515 IIQLFIY-------IIFYNSVYNNNIYYTVPMY*DT*MCGTLFVN*TS*FCTYVWLKYEV 357
           II LFI+       IIF+ S++N N Y  +P   D        +N  +  C  V L +  
Sbjct: 45  IITLFIFSFVISRMIIFFISLFNKNTYCELPAVADA------IINSIALVCIIVILYFSS 98

Query: 356 IRLNLEMYIRIIIAYSANILKYTR 285
            +LN+E+    +  Y AN+ +  R
Sbjct: 99  RKLNVEIRRGEVEDYRANLERNQR 122


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 192 GNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNV--GTIRNDNADIHFQ 344
           G + +     LD+ VG+  K  NGV+ +YK   I + V   T    + D HFQ
Sbjct: 299 GVVSDMFGKPLDFGVGRTLKNNNGVIAAYKG--IFEKVIEATAAVTSKDPHFQ 349


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 578 SDPLVSRLFCWLWYDHIKNSEIIQLFIYIIFYNSVYNNNIYYTVP 444
           SDP+ SR     WY        + L  +IIF++    NNI + +P
Sbjct: 346 SDPIKSRFH---WYPKSSTRFAVALSKHIIFFDLDLLNNISFPIP 387


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 124 FANCFNSRRSNFMILDI 74
           F NCF +R SN+M+L I
Sbjct: 167 FVNCFKTRLSNWMLLPI 183


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 602 LLALFNTRSDPLVSRLFCWL-WYDHIKNSEIIQLFIYIIFYNSVYNNNIYYTV 447
           L  LF   S+     + C+L W+     +  IQ F  IIF +  + N+I  ++
Sbjct: 320 LKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSI 372


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +3

Query: 75  MSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKE 254
           + ++   ++++   +  + N  LV K+  + + L    L N  ES+T+ ++ ++ KFD +
Sbjct: 110 LCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILH---LRNF-ESVTDKMNQRIDKFDGK 165

Query: 255 LNGVL 269
            N V+
Sbjct: 166 FNSVI 170


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 326 CGYTFPSSSGLLHISTIH 379
           C +TFP+  G +H+S I+
Sbjct: 172 CNFTFPTIQGSIHLSDIN 189


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 84  IIKFDLRELKQLANDKNSCLVVKKITQNLA 173
           I+K D+  +K +A  K+ CL VK   QN++
Sbjct: 317 IMKPDVLFIKSIAVLKSKCLAVKSSLQNIS 346


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
 Frame = -1

Query: 165  FV*SFLQPN------KNFCRLPTVLTLVGQIL 88
            FV SF +PN      +N+CR   V+++VG +L
Sbjct: 2195 FVESFPEPNNWVTSRQNYCRTLAVMSIVGYVL 2226


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 309 TIRNDNADIHFQVQADYFIFQPYIGAKLT--GLVNKKCSTHLSVL 437
           T RND AD HFQ  A+     P     +T  G++ ++C  +   L
Sbjct: 512 TGRNDQADFHFQRAAE---INPNNSVLITCIGMIYERCKDYKKAL 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,983
Number of Sequences: 5004
Number of extensions: 48491
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)