Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5849
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0621 - 16291770-16291786,16292847-16293207                       28   7.5  
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49...    28   7.5  
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42...    28   7.5  

>05_03_0621 - 16291770-16291786,16292847-16293207
          Length = 125

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 303 VGTIRNDNADIHFQVQADYFIFQP 374
           + TIR D+ D H ++ ADYF   P
Sbjct: 58  IKTIRRDHVDAHSRLVADYFAEHP 81


>02_01_0071 -
           496936-497158,497231-497352,497918-497966,498141-498211,
           498368-498454,498660-498740,498838-498901,498994-499057,
           499246-499444,499916-500134
          Length = 392

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 634 KRFKAAILKVTSWPSLTLDPIHLSPGSSV 548
           KR +A IL V    S+TLDP HLS  ++V
Sbjct: 29  KRDEALILPVNDSISVTLDPDHLSATTTV 57


>02_01_0057 +
           420812-421556,422473-422597,422622-422912,423357-423555,
           423737-423800,423894-423957,424055-424135,424334-424420,
           424492-424500
          Length = 554

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 634 KRFKAAILKVTSWPSLTLDPIHLSPGSSV 548
           KR +A IL V    S+TLDP HLS  ++V
Sbjct: 343 KRDEALILPVNDSISVTLDPDHLSATTTV 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,788,993
Number of Sequences: 37544
Number of extensions: 251183
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)