Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5849
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormo...    28   6.7  
AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81556-7|CAB04519.1|  569|Caenorhabditis elegans Hypothetical
           protein F58G1.7 protein.
          Length = 569

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
 Frame = -2

Query: 533 HIKNSEIIQLFIYIIFYNSVYNNNIYYTVPMY*DT*MCGTLFVN*TS*FCTYVWLKYEVI 354
           H+  + II LF+   F +++ N +IY  +P+     +   +F   +S      +L Y V+
Sbjct: 137 HLSTTSIILLFLSSSFLSTITNLSIYLIIPLVAYFSLFAVIFSGHSS-MANASFLLYIVV 195

Query: 353 RLN---LEMYIRIIIAYSANILKYTRIFIAY*DTVQLFIKFT-NFII**VCYRFFNISKA 186
            ++   + +Y  +    S  IL     F        L + FT NF +    +++   S  
Sbjct: 196 SISGIGIFLYYAVQDVQSFGILVPVENFRLSDILSSLMVGFTVNFYLLNSSFQYQIYSPM 255

Query: 185 PWL*SQILCNLFYNQTRIFVVCQLF*LS*VKFYDF-RHYYKFPNS 54
           P +    L   FY   ++F+   +F LS   F +F R + KF  S
Sbjct: 256 PTMHKLRLTLTFYGVFQLFISIFIF-LSATIFLNFLREHCKFAMS 299


>Z73908-4|CAA98127.2|  447|Caenorhabditis elegans Hypothetical
           protein F53B2.5 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 165 NLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNV 305
           N+AL+    G IK  + N L  +    D E+N V +     CI Q V
Sbjct: 29  NIALKEQFYGRIKNGVLNALRNQTLDIDSEVNAVWIITNMCCISQEV 75


>Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical
           protein C39E9.6 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 192 GNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYF 362
           GN KES TN+L     K+D  L     +Y N C +Q+    +    +++++   D F
Sbjct: 46  GNRKESATNMLKM---KWDSSLEQSAQNYANGCHMQHSTNDKTIGENLYWEWSGDPF 99


>AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 15 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  DLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYK-VGKFDKE 254
           DL  ++ + N+K S +V K  TQ + +  W L  +  +I   L  + +G  D E
Sbjct: 150 DLTLVEIVKNNKKSRMVTKSATQMITVHDWTLLGLYVTIEMFLSMEFMGSIDNE 203


>AC024775-5|AAK68457.3|  259|Caenorhabditis elegans Hypothetical
           protein Y41D4A.7 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 155 LFYNQTRIFVVCQLF*LS*VKFYDFRHYYKFPNS*ISMRIKLFTSEI 15
           LF   T++FV+  +F  S   F   R   KFP + + MR K+   E+
Sbjct: 3   LFIALTKLFVLILIFSSSSSSFPVSRDLVKFPETYVLMRSKIVDCEV 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,657
Number of Sequences: 27780
Number of extensions: 259856
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)