Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5848
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.18 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.72 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   0.95 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.7  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.2  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   2.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   3.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   3.8  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   6.7  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 548 TRSRPRHVTAGVPQGSALSPLLFSLYINDI 459
           T +R ++   G PQGS +SP+L ++Y++ +
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQL 439


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 583 VDPFVPISSRRERVPG-PVT---SQPESRKAPPSPRYYS 479
           V P +P+S     VP  P T   S+P+   APP+P Y+S
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYFS 344


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 335 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 219
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 547 RVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRVGRRRCFID 371
           RVP P  S   + K+PPS       I +  P L+ P   RSS  +P  T     +   I 
Sbjct: 192 RVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIV 251

Query: 370 DFRPQLPP 347
           D     PP
Sbjct: 252 DHSTPSPP 259


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = -3

Query: 611 GSCSSYETTCRPVRSDIESKGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPE--TH 438
           G  S+     R +  DI+   + S      A  PQ S+  P   S Y  ++P SP   T+
Sbjct: 59  GKSSNLVRKRRGLDEDIDEFSSSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKITN 118

Query: 437 LALFADDTAIYYSCRKKALLHRRLQTAATT 348
           +   +     Y S   + + + ++++  +T
Sbjct: 119 IGQSSPRALRYLSPESQRIKNAKMKSPIST 148


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 105 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 209
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -1

Query: 274 VALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRY 95
           +A R+   ++L +   ++       +S  S  PY  P  S    SP      S  ++ RY
Sbjct: 248 LAQRSGPTSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRY 307

Query: 94  ATVPPS 77
           A  PP+
Sbjct: 308 AKQPPT 313


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 520 PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 407
           P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 425 PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 8/177 (4%)
 Frame = -1

Query: 583 VDPFVP---ISSRRERVPGPVTSQPESRKAPPSPRYYSVCISTIYP-----GLRRPIWRS 428
           + P VP    SS    +P   TS  ++  +P      S   ST  P      L  PI  +
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPT 250

Query: 427 SPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*A 248
            P T  S+T +               P  + S S  +T T       S+  V    P  +
Sbjct: 251 VPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTTPVTPTVPPTS 309

Query: 247 SLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 77
           + S    + TPPPP + S   TS    P  S    + +++      T+    TVPP+
Sbjct: 310 TSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 9/144 (6%)
 Frame = -1

Query: 583 VDPFVP---ISSRRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTP 413
           + P VP    SS    +P   TS  ++  +P      S   ST  P         +P  P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306

Query: 412 PSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVA----LRTPR*AS 245
           P++T             P  P   S +G+ +S L        +S  +       TP   +
Sbjct: 307 PTSTS--------STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT 358

Query: 244 L--SRLGASITPPPPFAQSRCSTS 179
           +  +   ++ TPPPP + S   TS
Sbjct: 359 VPPTSTSSTSTPPPPASTSSTGTS 382


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = -3

Query: 458 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 288
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 287 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 198
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 593 ETTCRPVRSDIESKGTRSRPRHVT----AGVPQGSALSPLL 483
           ET CRP+R   ES+G      H+     AG     A++ LL
Sbjct: 456 ETMCRPIRKLTESRGLDLSAHHLAVFGGAGGQHACAIASLL 496


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 518 GVPQGSALSPLLFSLYINDI 459
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 153 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 248
           F+L    Y L E  +W  GG   + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 325  GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 206
            GAS+  P    R SS       P  AS++    +I  PPP
Sbjct: 889  GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -3

Query: 287 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 117
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 116 RPHIKTVRDR 87
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 166 PRRSNI*ASPSTVG*HSAPTSRRYATVPPSF*DVSTR 56
           P  SN  +  ST   H  P+S+R + +PP+  ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 53/177 (29%), Positives = 62/177 (35%), Gaps = 11/177 (6%)
 Frame = -1

Query: 577 PFVPISSRRERVPGPV--TSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPP-- 410
           P  P  SRR R   P+   S   S   PP P   +   S   P    P  RS+P  PP  
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP----PQGRSAPPPPPPR 367

Query: 409 STTRVGRRRCFIDDFR----PQLPPWDSGSGSGASTLTP-RKAQRCSSKGVALRTPR*AS 245
           S    GR+   +   R    P  PP  +  G  A  L P   A R S+  V    P   S
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPP-PAIPGRSAPALPPLGNASRTSTPPV----PTPPS 422

Query: 244 LSRLGASITPP--PPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPP 80
           L        PP  PP        +P   P  S   A P   G  +AP     A  PP
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAPP 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,444
Number of Sequences: 5004
Number of extensions: 64150
Number of successful extensions: 230
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)