Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5847
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   6.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 539 QTAKIIFKTLNC-LIFYTMHISVWKVTSI*LLCSSLFEK 426
           Q  KI+F+   C L  YT+ ++VW   S  L    LF K
Sbjct: 37  QKKKILFRYTVCSLAIYTIGMAVWASRSSILFQHPLFSK 75


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 437 VRNKVTKLK*LSKQKYALCKKLNN*AF*KLFLQFDQLSHLTKYLSATVFLLLSGIEIVRL 616
           + N+VT    L KQ+ +    L      KLF    ++  L++YLS+T+FL L    IV L
Sbjct: 259 LHNQVTNTSHLEKQRISTVATL---FISKLF----EIPSLSEYLSSTLFLDLQAFCIVAL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,790
Number of Sequences: 5004
Number of extensions: 46907
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)