Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5846
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.4  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   5.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   5.8  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 83  SYPQLAAIFQEYEYLTGHEIEHAIKSEFSGDIEKALLTIVK 205
           S+ +LA IFQE   +T HE+ H      SG I   LL++ K
Sbjct: 877 SFSELAKIFQEGSNITSHELLH------SGLIHNLLLSLKK 911


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 64  HDPVLSLVPSAGGHLPGVRILDRT 135
           HD V    PS+ G+ P +R+ DRT
Sbjct: 10  HDKVFPYGPSSNGYNPVIRLTDRT 33


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 675 HTIEIRCTVTDIFYILSCYNSF 610
           H IE+ CT+  IF ++ C+  F
Sbjct: 725 HVIELICTLLLIFVVIYCFTFF 746


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 110 QEYEYLTGHEIEHAIKSEFS----GDIEKALLTIVKVVRNKPLYFAERLHKS 253
           QEY  +TG+++ HA   E S      I   LL  +K++  +P+ F   L+ S
Sbjct: 329 QEYREITGNQLVHARSEEESLSARDIIMNYLLIPLKMLATEPIVFLVSLYCS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,590
Number of Sequences: 5004
Number of extensions: 48623
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)