Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5845
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0085 - 20638769-20639150,20640054-20640286 30 1.7
08_01_0394 - 3487360-3488229 29 3.9
07_03_0349 - 17051786-17052376 29 3.9
12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002 28 6.9
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 28 6.9
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 28 6.9
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 28 6.9
02_04_0213 + 20974712-20975413 28 6.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 9.1
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 27 9.1
>03_05_0085 - 20638769-20639150,20640054-20640286
Length = 204
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 455 LATTAAFQQQYFRVVPRSLRVQEGSEAVLECAVANLAGQVQWAKDGFALGFSFS 616
+A TA+ + Y R R R+QE E + + + +LA + + GFA G S+S
Sbjct: 1 MAATASAAEGYER--EREARIQENMERMQKLGIRDLANRFNQSATGFAGGGSWS 52
>08_01_0394 - 3487360-3488229
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 457 GHDSSLPATVLQGGSSKPAGSRGLRGGPRVRCSQSSRP 570
GHD P + GG S AG G+ GG V RP
Sbjct: 32 GHDDLSPGSGGGGGPSSTAGGAGIGGGEVVARRPRGRP 69
>07_03_0349 - 17051786-17052376
Length = 196
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 599 VQIHLWPTAPGLLDWLQRTRGPPLSPLEPA 510
+++H WP P LL T G PLSP A
Sbjct: 82 LRLHGWPIMPPLLGVYDFTAGSPLSPTSGA 111
>12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002
Length = 185
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 418 RSVLEELGCFLRAGHDSSLPATVLQGGSSKPAGSRGLRGGPRVRCSQSSRPGAVG 582
R+ + +LG L + +L +V G +PA G+ G V S ++R GA G
Sbjct: 65 RANVVQLGYILGSQFALNLDPSVSPGSVIRPANQNGMMGSQDVVYSAAARHGASG 119
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 590 HLWPTAPGLLDWLQRTRG-PPLSPLEPAGF 504
HLW +APGL + R G PP + EP GF
Sbjct: 51 HLWRSAPGLR--IVRAAGRPPATVEEPQGF 78
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 497 PP*STVAGRLLSWPARKKQPSSSKTDR 417
P S V G L WPARKK S+ K+ +
Sbjct: 190 PVKSPVPGMKLEWPARKKPSSALKSKK 216
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +1
Query: 439 GCFLRAGHDSSLPATVLQGGSSK---PAGSRGLRGGPRVR---CSQSSRPGAVGQR 588
G FL+ +D L + GG + P G RGG RVR CS ++ PG QR
Sbjct: 50 GAFLQGDNDELLTSRTGHGGGNGGAFPGGLSSGRGG-RVRQRSCSVAAAPGRQSQR 104
>02_04_0213 + 20974712-20975413
Length = 233
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 499 SSKPAGSRGLRGGPRVRCSQSSRPGAVGQ 585
SS P G GL G SSR GAVGQ
Sbjct: 150 SSPPGGGGGLYGCAPTMLRASSRAGAVGQ 178
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 603 PSANPSLAHCTWPARLATAHSRTASEPS*TRRLRGTTLKYCCWKAAVVASTQKTAK 436
PSA SL+ PA + S TAS + R T + C AA +++ TAK
Sbjct: 614 PSATSSLSSSPSPA--PSPDSATASRSASPTSARPATSSWTCTSAATASASPATAK 667
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -1
Query: 492 LKYCCWKAAVVASTQKTA----KFFQNRPAILISIFI 394
+K CCW ++++ T KT+ K N P++ +S+ I
Sbjct: 37 VKSCCWWSSMLGFTAKTSCPKKKNITNTPSVYMSVLI 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,469
Number of Sequences: 37544
Number of extensions: 354300
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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