Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5845
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.028
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.028
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.79 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.79 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.79 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.79 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.5 bits (63), Expect = 0.028
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 515 VQEGSEAVLECAVA-NLAGQVQWAKDGFAL 601
           +Q G    L+C+ A N   QV WA DGFAL
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFAL 462



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 485 YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 592
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 809 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 845


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.5 bits (63), Expect = 0.028
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 515 VQEGSEAVLECAVA-NLAGQVQWAKDGFAL 601
           +Q G    L+C+ A N   QV WA DGFAL
Sbjct: 433 LQPGPAVSLKCSAAGNPTPQVTWALDGFAL 462



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 485 YFRVVPRSLRVQEGSEAVLECAV-ANLAGQVQWAKDG 592
           YF    R + V++G  A L C V  +    V W K G
Sbjct: 805 YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGG 841



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 524 GSEAVLECAVA--NLAGQVQWAKDGFALG 604
           G    L C+V   +L   + W KDG A+G
Sbjct: 625 GERTTLTCSVTRGDLPLSISWLKDGRAMG 653


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 207 HREYNNLNINEYRNTNTATCSRYHDN 130
           +  YNN N N Y N N      Y+ N
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 207 HREYNNLNINEYRNTNTATCSRYHDN 130
           +  YNN N N Y N N      Y+ N
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 207 HREYNNLNINEYRNTNTATCSRYHDN 130
           +  YNN N N Y N N      Y+ N
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 207 HREYNNLNINEYRNTNTATCSRYHDN 130
           +  YNN N N Y N N      Y+ N
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 165 TNTATCSRYHDNRKSGLY*KKTGFFFSH 82
           TN+ TC R  D  +     KK+G   SH
Sbjct: 263 TNSVTCDRPSDEAEPSSTSKKSGIVRSH 290


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 426  FGRTWLFFACWPR 464
            +G+ WLFF C  R
Sbjct: 999  YGKVWLFFGCRQR 1011


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 207 HREYNNLNINEYRNTN 160
           +  YNN N N Y N N
Sbjct: 327 YNNYNNYNNNNYNNYN 342


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 512 RVQEGSEAVLECAVAN 559
           R  +GS+ +L+CA +N
Sbjct: 760 RSPQGSQGLLQCATSN 775


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 142 IPRQSEIGSLLKKNRFFFL 86
           IP+  E+   LKKN  F L
Sbjct: 277 IPQLQEVSEFLKKNTGFTL 295


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 609 EKPSANPSLAHCTWPARLAT 550
           EK + + + ++ TWP RL T
Sbjct: 384 EKMTLSVNESNITWPGRLQT 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,579
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)