Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5843
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942     33   0.18 
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196...    32   0.24 
01_05_0438 + 22142646-22143659,22144319-22144858                       31   0.56 
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718...    30   0.98 
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    30   1.3  
08_02_0177 - 13786540-13787055                                         29   1.7  
08_02_0176 - 13777476-13777568,13779610-13780053                       29   1.7  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    29   1.7  
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408...    29   1.7  
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549...    29   2.3  
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772...    29   3.0  
12_02_0897 + 24105498-24106109                                         28   4.0  
09_03_0199 - 13421210-13421578                                         28   4.0  
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788...    28   4.0  
03_05_0267 - 22538631-22539452                                         28   4.0  
02_04_0322 - 22025137-22025385                                         28   5.2  
08_01_0495 - 4309816-4310592                                           27   6.9  

>10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942
          Length = 582

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 491 QAWTPEAVGGDAVSAISGVGRGDSVRCGDA---IGGSDQGRGEV 369
           +AWTP A   +A +   G GRG+  R G+    +  S +G GEV
Sbjct: 6   EAWTPSAARSEAWTPGGGEGRGEVARGGEGGGEVARSGEGGGEV 49


>04_03_0252 -
           13517763-13517861,13518845-13519315,13519400-13519679,
           13519747-13519829
          Length = 310

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 479 PEAVGGDAVSAISGVGRG-DSVRCGDAIGGSDQGRG 375
           P AVGGDA +A++G G G  ++  G   GG D   G
Sbjct: 55  PAAVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGG 90


>01_05_0438 + 22142646-22143659,22144319-22144858
          Length = 517

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 467 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 375
           GGD+V+ + GVG GD    GD IG   +G G
Sbjct: 377 GGDSVTVVQGVGDGDG--GGDGIGRGRKGSG 405


>01_05_0369 -
           21468204-21468595,21471417-21471606,21471680-21471867,
           21484028-21484580
          Length = 440

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 476 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 360
           EA  G+ V AI G G GD+   GDA    ++    +G+P
Sbjct: 388 EAGAGNGVPAIFGRGGGDAGEEGDAAVSKEETAASIGAP 426


>01_01_0623 +
           4672581-4673413,4674274-4674389,4674694-4674902,
           4675953-4676072,4676185-4676313,4676394-4676442,
           4676899-4676970,4677574-4677707,4677798-4677915,
           4678332-4678541,4678630-4678942,4679539-4679632,
           4679854-4679962,4680243-4680514,4680597-4680724,
           4680832-4681066,4681570-4681758,4681845-4682128,
           4682218-4682398,4682486-4682728,4682904-4682986,
           4683119-4683227,4687996-4688091,4688675-4688764,
           4688881-4689129,4689233-4689412,4690179-4690250,
           4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -3

Query: 518 NGSRS*SVYQAWTPEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 366
           N +RS SV+ + T  A G   +   SGVG+G  +  G + GG   GRG  G
Sbjct: 575 NRARSVSVHTSGTISATG---LGCRSGVGQGKILNSGVSGGGGHGGRGGDG 622


>08_02_0177 - 13786540-13787055
          Length = 171

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 476 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 360
           EA  GD V A  G G GD+   GDA    ++    +G+P
Sbjct: 78  EAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116


>08_02_0176 - 13777476-13777568,13779610-13780053
          Length = 178

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 476 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 360
           EA  GD V A  G G GD+   GDA    ++    +G+P
Sbjct: 78  EAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116


>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 476 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 360
           EA  GD V A  G G GD+   GDA    ++    +G+P
Sbjct: 78  EAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116


>02_01_0554 +
           4083020-4083854,4083877-4083906,4084843-4084911,
           4085170-4085445,4085601-4085720,4086037-4086044
          Length = 445

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 464 GDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 366
           G+  +A + VG GD V  G+  G  D  RGEVG
Sbjct: 202 GEKSAAAAEVGEGDEVEAGEEDGNGD--RGEVG 232


>02_05_0157 -
           26353971-26354336,26354645-26354726,26354838-26354933,
           26355365-26356068
          Length = 415

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/39 (46%), Positives = 19/39 (48%)
 Frame = -3

Query: 482 TPEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 366
           T  AV G  V A+ GVG G S   G A GG   G G  G
Sbjct: 52  TVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGGARG 90


>07_03_1528 +
           27474973-27475289,27476890-27477073,27477081-27477261,
           27477270-27478206,27478384-27479035,27479352-27479798
          Length = 905

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 476 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 360
           EA GG  +  I+G G    ++   A GG  QGR  V +P
Sbjct: 8   EASGGPVMGDITGAGGEHRLQMPPAHGGGRQGRQVVAAP 46


>12_02_0897 + 24105498-24106109
          Length = 203

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 470 VGGDAVSAISGVGR-GDSV-RCGDAIGGSDQGRGEVGS 363
           VGG A S  +G G  GD+V   G A GG + G GEV +
Sbjct: 61  VGGGAPSTGAGAGGDGDTVVGAGAAAGGGNAGDGEVAA 98


>09_03_0199 - 13421210-13421578
          Length = 122

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 461 DAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 366
           D+ S  + VGRG ++     IGGS  G G  G
Sbjct: 86  DSCSKANDVGRGHAIEGKSGIGGSSWGHGRHG 117


>03_06_0209 -
           32377045-32378008,32378086-32378210,32378772-32378816,
           32379009-32379295,32379778-32381509,32381631-32381971,
           32383753-32383876,32384484-32384722,32385156-32385534
          Length = 1411

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 406 SPHLTESPRPTPLMALTASPPTASGVHAW*TD-HDREP 516
           SP+  ++P     +ALT     ASG++ W TD  +R+P
Sbjct: 462 SPNNIDAPETGKKLALTRGISAASGINEWVTDGMERDP 499


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 467 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 375
           GG +    SG G  D   CGD  GG + G G
Sbjct: 135 GGSSGGEGSGGGSSDGEGCGDGSGGGELGGG 165


>02_04_0322 - 22025137-22025385
          Length = 82

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 488 AWTPEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGR 378
           AW PE +GG A S   G  R     CG A+    +GR
Sbjct: 3   AWLPERLGGAAASP-HGAARQPGCHCG-ALSARQRGR 37


>08_01_0495 - 4309816-4310592
          Length = 258

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 444 YGAYGVAPYGLGRP---RLVNRSRPGAVI 521
           +GAYG A +G GRP    LV+ +  G ++
Sbjct: 200 FGAYGAADFGFGRPARVELVSMNHDGEMV 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,992,023
Number of Sequences: 37544
Number of extensions: 112392
Number of successful extensions: 845
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)