Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5843
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    28   3.5  
AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen prot...    27   8.1  
AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin (cae...    27   8.1  

>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +3

Query: 390 TAPYGIAAPYGIAAPYTAY----GAYGVAPYGLG 479
           TA YG     G+   Y  Y    G YG+ PYG+G
Sbjct: 17  TAQYGYGGYPGMMGGYGGYPGMMGGYGMRPYGMG 50


>AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen protein
           54 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -3

Query: 470 VGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 366
           VGGD    I G    D     D + GSD   G  G
Sbjct: 226 VGGDGTEGIQGAPGKDGENGSDGVAGSDGAPGAPG 260


>AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 4 protein.
          Length = 66

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 399 YGIAAPYGIAAPYTAYGAYGVAPYGLGRPRLVNRSRPG 512
           YG    YG   P   YG YG+ PYG+     +   RPG
Sbjct: 22  YGPYGGYGGGYP-GMYGGYGMRPYGMYGGYGMGMYRPG 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,990,022
Number of Sequences: 27780
Number of extensions: 70211
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)