Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5840
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    31   0.092
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   3.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   4.6  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    24   8.0  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 30.7 bits (66), Expect = 0.092
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 70  KEKNEYIHQQ*PNHQKLKSQNSIHKKDDSDRMELETDETSSIISLEDI 213
           + K +  H +  +H+K KS +S HK++D   + + T  T SI   + +
Sbjct: 547 QHKQKSSHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSITPADPV 594


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 70  KEKNEYIHQQ*PNHQKLKSQNSIHKKDDSDRMELETDETSSIISL 204
           KE+ E  HQ+    +  + Q  ++K+ +S R+  E  E ++I+ +
Sbjct: 99  KERVERYHQELEAKKLRRKQKKVNKEKNSPRLVGENTELAAIMGI 143


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 328 GMNFRYLIPSYGLQYFSKF 272
           GM+ RYL+P+  +QY  ++
Sbjct: 324 GMSIRYLLPNSVIQYIERY 342


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  STTHDFLQPSQINLKGKKRIHSPTI 101
           S ++DF    Q  + G +RIH P +
Sbjct: 491 SNSYDFFMKGQEIMSGAQRIHDPEL 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,885
Number of Sequences: 5004
Number of extensions: 24776
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)