Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5840
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1339 + 32760424-32760584,32762428-32764462                       29   1.4  
08_01_0471 - 4147170-4149207,4150535-4150692                           28   2.5  
08_01_0329 - 2962018-2962695                                           27   4.4  
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589...    27   4.4  
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541...    27   7.7  
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439...    27   7.7  

>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 253 DPRTDEEIWKNIEDHMTELNNENSFPINLDQ 345
           DP++ ++ WK +ED + E+ N N+  ++ ++
Sbjct: 21  DPKSFDKSWKKLEDAIREIYNHNASGLSFEE 51


>08_01_0471 - 4147170-4149207,4150535-4150692
          Length = 731

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 253 DPRTDEEIWKNIEDHMTELNNENSFPINLDQ 345
           DPR  E+ W+ ++D + E+ N N+  ++ ++
Sbjct: 20  DPRFFEKAWRKLDDAIREIYNHNASGLSFEE 50


>08_01_0329 - 2962018-2962695
          Length = 225

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 142 KKDDSDRMELETDETSSIISLEDIE 216
           KKDD D  E E D+TSS +S ED E
Sbjct: 170 KKDD-DEEEEEKDQTSSSVSSEDEE 193


>03_05_1064 -
           30058253-30058467,30058549-30058762,30058846-30058936,
           30059361-30059617,30059702-30059902,30059975-30060065,
           30060510-30060573,30060754-30061021,30061118-30061249
          Length = 510

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 118 LKSQNSIHKKDDSDRMELETDETSSIISLED 210
           L +QNS+ +K       L TD+TS++  L+D
Sbjct: 463 LSNQNSVQEKAKYISNHLNTDQTSAVSKLQD 493


>08_01_0620 -
           5416197-5416225,5416333-5416652,5417144-5417235,
           5417304-5417394,5417489-5417577,5417812-5417929,
           5418007-5418098,5418180-5418215,5418323-5418403,
           5418510-5418617,5418809-5418901,5419045-5419146,
           5419345-5419449,5419526-5419612,5419952-5420227
          Length = 572

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 115 KLKSQNSIHKKDDSDRMELETDETSS 192
           K  S  +  KKDDSD  E E+DE+ S
Sbjct: 163 KKTSVTAQKKKDDSDSSESESDESDS 188


>04_04_0345 -
           24542869-24543540,24543725-24543805,24543845-24543910,
           24543991-24544098,24545101-24545436,24545516-24545586,
           24546105-24546252
          Length = 493

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 112 QKLKSQNSIHKKDDSDRMELETDETSSIISL 204
           +K K+ + + K  DSDR+E E+D T S + +
Sbjct: 223 EKAKAISVLEKIYDSDRLEEESDGTGSYLDI 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,166,331
Number of Sequences: 37544
Number of extensions: 140796
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)