Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5840
         (411 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071765-1|AAH71765.1|  259|Homo sapiens tRNA-yW synthesizing pr...    30   3.4  
AK098237-1|BAC05267.1|  259|Homo sapiens protein ( Homo sapiens ...    30   3.4  
AF111782-1|AAD29948.1| 1938|Homo sapiens myosin heavy chain prot...    29   6.0  
BC041854-1|AAH41854.1|  274|Homo sapiens hypothetical protein LO...    29   7.9  
BC031603-1|AAH31603.1|  422|Homo sapiens ALS2CR12 protein protein.     29   7.9  
AC007256-2|AAY24226.1|  445|Homo sapiens unknown protein.              29   7.9  
AB053314-1|BAB69022.1|  445|Homo sapiens ALS2CR12 protein.             29   7.9  

>BC071765-1|AAH71765.1|  259|Homo sapiens tRNA-yW synthesizing
           protein 3 homolog (S. cerevisiae) protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 31  RRTISYNHPR*T*KEKNEYIHQQ*PNHQKLKSQNSIHKKDDSDRMELETDETSSI 195
           R T++  HP+   K  + YIH++  N +K ++Q  I K+ D    ELE D+   +
Sbjct: 198 RETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQ-CITKESDE---ELENDDDDDL 248


>AK098237-1|BAC05267.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40918 fis, clone UTERU2005593. ).
          Length = 259

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 31  RRTISYNHPR*T*KEKNEYIHQQ*PNHQKLKSQNSIHKKDDSDRMELETDETSSI 195
           R T++  HP+   K  + YIH++  N +K ++Q  I K+ D    ELE D+   +
Sbjct: 198 RETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQ-CITKESDE---ELENDDDDDL 248


>AF111782-1|AAD29948.1| 1938|Homo sapiens myosin heavy chain
           protein.
          Length = 1938

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 DEEIWKNIEDHMTELNNENSFPINLDQYISLLD 363
           D+ I K ++D M  LNN+  FP+N  ++  + D
Sbjct: 58  DKVIVKTLDDRMLTLNNDQVFPMNPPKFDKIED 90


>BC041854-1|AAH41854.1|  274|Homo sapiens hypothetical protein
           LOC440295 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 304 ELNNENSFPINLDQYISLLDSSRGGARYP 390
           ELNNEN   + L+Q +  L+ S GGA  P
Sbjct: 175 ELNNENKSTLQLEQQVKELEKS-GGAEEP 202


>BC031603-1|AAH31603.1|  422|Homo sapiens ALS2CR12 protein protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  PASTTHDFLQPSQINLKGKKRIHSPTITESSKT 119
           PA   H++LQP++  +  K +IHS    E++K+
Sbjct: 44  PAPKNHNYLQPTKPVVSPKMKIHSARQEETNKS 76


>AC007256-2|AAY24226.1|  445|Homo sapiens unknown protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  PASTTHDFLQPSQINLKGKKRIHSPTITESSKT 119
           PA   H++LQP++  +  K +IHS    E++K+
Sbjct: 44  PAPKNHNYLQPTKPVVSPKMKIHSARQEETNKS 76


>AB053314-1|BAB69022.1|  445|Homo sapiens ALS2CR12 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  PASTTHDFLQPSQINLKGKKRIHSPTITESSKT 119
           PA   H++LQP++  +  K +IHS    E++K+
Sbjct: 44  PAPKNHNYLQPTKPVVSPKMKIHSARQEETNKS 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,544,485
Number of Sequences: 237096
Number of extensions: 781775
Number of successful extensions: 1764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)