Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5840
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr... 31 0.43
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 27 4.0
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 27 4.0
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 27 4.0
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81097-4|CAB03176.1| 100|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 27 5.3
AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a prot... 27 5.3
Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical pr... 26 9.2
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 26 9.2
>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
F31C3.3 protein.
Length = 2029
Score = 30.7 bits (66), Expect = 0.43
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 112 QKLKSQNSIHKKDDSDRMELETDETSSIISLE 207
+KL Q S+H+KDD DRM+ D+ + + ++
Sbjct: 1893 EKLMLQKSLHEKDDIDRMKERADKVNHFMYIK 1924
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +1
Query: 106 NHQKLKS---QNSIHKKDDSDRMELETDETSSIISLE-DIEXXXXXXXXXXXXDPRTDEE 273
+HQ S N+ H D + ++ E D+ + + D+E D TDE+
Sbjct: 124 SHQSAHSAAVSNASHHSDSEEELDYEEDDIDVDLDGDIDVETMKMAARGDLKVDDTTDED 183
Query: 274 IWKNIEDHMTELNNENSFP 330
+++D E E+ P
Sbjct: 184 EINDVKDETMEEQKEDGEP 202
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +1
Query: 106 NHQKLKS---QNSIHKKDDSDRMELETDETSSIISLE-DIEXXXXXXXXXXXXDPRTDEE 273
+HQ S N+ H D + ++ E D+ + + D+E D TDE+
Sbjct: 259 SHQSAHSAAVSNASHHSDSEEELDYEEDDIDVDLDGDIDVETMKMAARGDLKVDDTTDED 318
Query: 274 IWKNIEDHMTELNNENSFP 330
+++D E E+ P
Sbjct: 319 EINDVKDETMEEQKEDGEP 337
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +1
Query: 106 NHQKLKS---QNSIHKKDDSDRMELETDETSSIISLE-DIEXXXXXXXXXXXXDPRTDEE 273
+HQ S N+ H D + ++ E D+ + + D+E D TDE+
Sbjct: 304 SHQSAHSAAVSNASHHSDSEEELDYEEDDIDVDLDGDIDVETMKMAARGDLKVDDTTDED 363
Query: 274 IWKNIEDHMTELNNENSFP 330
+++D E E+ P
Sbjct: 364 EINDVKDETMEEQKEDGEP 382
>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical protein
C26H9A.2 protein.
Length = 1334
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 178 PSQAPFYQSHLSCVCCFEISVFDDSVIV 95
PS+ P +HL+C C + S FD S+++
Sbjct: 1063 PSKKPSQTAHLACFQC-QFSAFDRSLLI 1089
>Z81097-4|CAB03176.1| 100|Caenorhabditis elegans Hypothetical
protein K07A1.6 protein.
Length = 100
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -3
Query: 181 HPSQAPFYQSHLSCV---CCFEISVFDDSVIVGECIR 80
HP Q PF Q L C+ C + D+ G C+R
Sbjct: 57 HPRQPPFSQCKLPCIPYSCRCNPGFYRDNQGTGRCVR 93
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
ZK593.5 protein.
Length = 1326
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +1
Query: 151 DSDRMELETDETSSIISLEDIEXXXXXXXXXXXXDPRTDEEIWKNIEDHMTELNNENSFP 330
D R ++E DE+ + E E + + E +WKNI+ T + S P
Sbjct: 1090 DHRRKQIEYDESMDALQREMKEVESDNLELKQRANKISKEALWKNIQSMETRSSGSPSVP 1149
Query: 331 IN 336
++
Sbjct: 1150 MS 1151
>AC006714-10|AAK29727.2| 253|Caenorhabditis elegans F-box a protein
protein 21 protein.
Length = 253
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 30 TTHDFLQPSQINLKGKKRIHSPTIT 104
T HDF+ P LK KK +H+ +T
Sbjct: 69 TAHDFVTPLMEVLKAKKCVHATELT 93
>Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical
protein F14B6.3 protein.
Length = 366
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 253 DPRTDEEIWKNIEDHMTELNNENSFPINLDQYISLLDSSRG 375
+PR +E K +ED + E ++E+SF I + + L D S G
Sbjct: 303 EPRMSDEAEKLVEDKIIEESDEDSFDI-IGRDEELDDDSNG 342
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 410 RLTIGRIGYRAPPRELSNKLIY*SKLIGNE 321
R T G + + PP LSN IY ++L G E
Sbjct: 219 RPTCGTLNFDIPPEALSNLNIYDNQLAGIE 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,948
Number of Sequences: 27780
Number of extensions: 138208
Number of successful extensions: 452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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