Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5840
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   4.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 NEQHYIARRYRNPNKNEEKIKEDRP*N*RRN 275
           N ++   RRY   +  +EK+ E+R  N +RN
Sbjct: 9   NREYRKDRRYEKLHNEKEKLLEERT-NRKRN 38


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 183 NEQHYIARRYRNPNKNEEKIKEDRP*N*RRN 275
           N ++   RRY   +  +EK+ E+R  N +RN
Sbjct: 9   NREYRKDRRYEKLHNEKEKLLEERT-NRKRN 38


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 106 NHQKLKSQNSIHKKDDSDRMELETDETSSIIS 201
           N ++ +      K+   DRME E  +   IIS
Sbjct: 274 NEREYRKYGKTSKERSRDRMERERSKEPKIIS 305


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 193 CCSF-HPSQAPFYQSHLSCVCCFEISVFDDSV 101
           C S+   S +  +Q   SC+CC E    + SV
Sbjct: 57  CSSYLQVSGSKIWQMERSCMCCQESGEREASV 88


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 70  KEKNEYIHQQ*PNHQKLKSQNSI 138
           K K +YI  + PN +K   +N +
Sbjct: 148 KPKEQYIPPELPNDEKSLFENGV 170


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 106 NHQKLKSQNSIHKKDDSDRMELETDETSSIISLEDI 213
           N ++  S+ + H+KD S    ++    SS + L+D+
Sbjct: 301 NVEETNSEET-HQKDGSSDSVIKRTVVSSYLQLQDL 335


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 106 NHQKLKSQNSIHKKDDSDRMELETDETSSIISLEDI 213
           N ++  S+ + H+KD S    ++    SS + L+D+
Sbjct: 216 NVEETNSEET-HQKDGSSDSVIKRTVVSSYLQLQDL 250


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 106 NHQKLKSQNSIHKKDDSDRMELETDETSSIISLEDI 213
           N ++  S+ + H+KD S    ++    SS + L+D+
Sbjct: 535 NVEETNSEET-HQKDGSSDSVIKRTVVSSYLQLQDL 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,499
Number of Sequences: 438
Number of extensions: 1831
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)