Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5839
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   0.87 
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    26   2.7  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   6.1  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    25   6.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   8.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   8.1  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 121  CKLRIKDKTSEAFERCTGVRISLAGTNFSNEIRTQQMFTIDFHDEGITSCNKNQNPQNY 297
            C   + D T++A  RC  V + L+     NEI   QM   ++ +   T  +  Q  ++Y
Sbjct: 888  CAQVVADYTAKANTRCERVPVQLSPAELDNEIERLQMQIAEWRNR--TGVSVEQAAEDY 944


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 LEKLVPASEIRTPVHRSNASD 147
           L KL P SE  T  HR NASD
Sbjct: 15  LHKLNPFSENSTSGHRKNASD 35


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 244 FHDEGITSCNKNQNPQNYNLRNYWW*DL 327
           F+DE I+   K  +   Y+  + WW D+
Sbjct: 363 FYDESISLLTKKVSRGEYSFLSPWWDDI 390


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 GITSCNKNQNPQNYNLRNY 312
           G+ +CN +  P+NY L+ Y
Sbjct: 13  GMQNCNLHNLPENYQLKYY 31


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 175 HQCIARMPRTSYPLCGVYI 119
           H+CI R    + P+CG Y+
Sbjct: 260 HRCIERSTDCNCPICGEYM 278


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 312 LVVGPLVSPHGVGATAPPV 368
           LV+G  V+PH +  + PPV
Sbjct: 435 LVLGTSVNPHSLSPSQPPV 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,107
Number of Sequences: 5004
Number of extensions: 34801
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)