Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5839
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0019 - 9688395-9688867,9688905-9689070                           31   0.48 
04_04_1329 - 32691667-32691819,32691920-32692081                       30   0.64 
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   3.4  
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    28   3.4  
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    27   4.5  
09_02_0082 - 4060018-4061604                                           27   7.8  
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240...    27   7.8  

>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 350 TYPVRTHKRSYHQ*LRKL*FCGF*FLLHDVIPSSWKS 240
           T  VR++  S+H    K  +C F F+ HDV+ S W S
Sbjct: 104 TNEVRSYATSFHG-TGKAEYCCFTFIRHDVLASQWSS 139


>04_04_1329 - 32691667-32691819,32691920-32692081
          Length = 104

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 209 LEKLVPASEIRTPVHRSNASDVL----SFMRSLHYE 114
           L+ L+P S+ R   HR +A+ VL    S++RSLH E
Sbjct: 39  LQALLPESQARNGAHRGSAARVLQETCSYIRSLHQE 74


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 163 RCTGVRISLAGTNFSNEIRTQQMFTIDFHDE 255
           RCTGV I   G N   +I T      DFH E
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 181 FEHQCIARMPRTSYPLCGVYITK 113
           FEH+ I R P  +Y LCG Y+ +
Sbjct: 319 FEHKYILRQPEATY-LCGFYVMR 340


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 396 RKRITASRQKQAGRWHLPRADSQEVLPPVI 307
           RK +T S     GR  LP+ D++  LPP++
Sbjct: 254 RKELTKSDVGNVGRIVLPKKDAEASLPPLL 283


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 349 PTPCGLTRGPTTSNYANYNFAG 284
           P P GLT  PTT++Y ++++ G
Sbjct: 120 PVPLGLTMSPTTAHY-SFSYGG 140


>05_05_0092 -
           22323049-22323224,22323840-22323887,22323962-22324016,
           22324260-22324360,22324457-22324518,22324683-22324881,
           22325107-22325254,22325331-22325377,22325928-22325995,
           22326428-22326542,22326657-22326816
          Length = 392

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 412 PRPFKPETHHCFTAETGGAVAP 347
           P+P  P   H  T+ TGGA  P
Sbjct: 15  PKPRPPRARHYATSSTGGATQP 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,089
Number of Sequences: 37544
Number of extensions: 235533
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)