Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5839
         (415 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK074500-1|BAC11025.1|  401|Homo sapiens protein ( Homo sapiens ...    31   1.1  
AF378754-1|AAL11991.1| 2063|Homo sapiens tumor endothelial marke...    31   1.1  
AJ583823-1|CAE47750.2|  711|Homo sapiens ubiquitin specific prot...    30   2.6  

>AK074500-1|BAC11025.1|  401|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90019 fis, clone HEMBA1000745, weakly similar to
           COLLAGEN ALPHA 1(I) CHAIN. ).
          Length = 401

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 199 WYPPARFEHQCIARMPRTSYPLCGVYITKPVS 104
           W PPAR   Q     PRT +PL G+   +P++
Sbjct: 158 WEPPARESRQPPTPPPRTCFPLAGLRSARPLT 189


>AF378754-1|AAL11991.1| 2063|Homo sapiens tumor endothelial marker 4
           protein.
          Length = 2063

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 199 WYPPARFEHQCIARMPRTSYPLCGVYITKPVS 104
           W PPAR   Q     PRT +PL G+   +P++
Sbjct: 158 WEPPARESRQPPTPPPRTCFPLAGLRSARPLT 189


>AJ583823-1|CAE47750.2|  711|Homo sapiens ubiquitin specific
           proteinase 51 protein.
          Length = 711

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 121 CKLRIKDKTSEAFERCTGVRISLAGTNFSNEIRTQQMFTIDFHDEGITSCNKNQNPQ 291
           CK  + DK  E   + T  +I    T+ S ++  QQ  T  F D+  T   K Q P+
Sbjct: 288 CKDYVYDKDIEQIAKETKEKILRLLTSTSTDVSHQQFMTSGFEDKQSTCETKEQEPK 344


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,643,701
Number of Sequences: 237096
Number of extensions: 1222707
Number of successful extensions: 2442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)