Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5839
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    27   4.1  
L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    27   7.1  
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    26   9.4  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    26   9.4  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    26   9.4  

>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 411 PGPSNRKRITASRQKQAGRWHLPRADSQEVLPP 313
           P    R RI +S  K+  +   PRA+S + LPP
Sbjct: 342 PRSRGRPRIHSSASKKTEKPETPRAESPDPLPP 374


>L08403-3|AAT92076.1|  335|Caenorhabditis elegans Hypothetical
           protein F42H10.3 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 391 THHCFTAETGGAVAPTP 341
           TH  ++ E GGAV+PTP
Sbjct: 170 THLIYSTEQGGAVSPTP 186


>Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical
           protein F48C5.1 protein.
          Length = 264

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 318 PPVITQIIILRVLIFIARC-YSFIVEVNREHLLSTY 214
           PPV+T ++ + +++ +A C Y F  +V   H  S Y
Sbjct: 190 PPVVTLLVFIVIIVLLAYCLYKF--KVRNPHHYSKY 223


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 291 LRVLIFIARCYSFIVEVNREHLLSTYFIRKIGTRQ 187
           LR+L+   R + F+V+  ++  ++TYF+  + ++Q
Sbjct: 135 LRILLGRVRKFEFVVQTQQDLNVTTYFLNILRSKQ 169


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 313 SNYANYNFAGFDFYCTMLFLHRGSQS*TFVEYVF 212
           S+YA  + + F F+   +F H   QS +F + VF
Sbjct: 73  SHYATLSLSSFSFFFRHIFPHLPQQSTSFDQEVF 106


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 392 NASLLHGRNRRGGGT 348
           +ASL+ GRN+R GGT
Sbjct: 65  DASLIFGRNKRSGGT 79


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 392 NASLLHGRNRRGGGT 348
           +ASL+ GRN+R GGT
Sbjct: 65  DASLIFGRNKRSGGT 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,865
Number of Sequences: 27780
Number of extensions: 202449
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)