Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5838
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.1  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 501 KRRLKNSPRNEQFFAYGLLYQCIAVSVERIVRLLG*EVSYFYC 373
           KR  K++P  ++ +AY  L   + V+ ER+   L  EV +  C
Sbjct: 177 KRNNKDAPLGKKTYAYIELSDKVIVTKERLYNTLAHEVCHLAC 219


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 457  LWSIIPVYCSIGRAYCKTSWIGSVLFLL 374
            +W+ +P  C I R YC T  +G  +F L
Sbjct: 2358 VWTNVPD-CDISRFYCYTKMLGEWMFTL 2384


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 458 AKNCSFLGEFFSRLLGEEIEWYSS----RSVISNLRL-GSLMRLFNSTATA 595
           A  C++     SRL   E+EW+ S    +S I N  L  SL R F++ A+A
Sbjct: 194 ALRCAYYILGSSRLRNSELEWFKSFLFKKSSIDNSLLHSSLGRCFSALASA 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,565
Number of Sequences: 5004
Number of extensions: 48982
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)