Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5838
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   4.7  

>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 KNKTLPIQEVLQYALPILQYTGIIDHRQKTAHFSANSLVV 497
           KN  L +Q +  + LP+L  + +  H  +T HFSAN L V
Sbjct: 211 KNYQL-LQTIFSFVLPLLVISILCLHMVRTLHFSANYLTV 249


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.6 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 15  NIRTKVIKFYVLPYLPK*RDLINQLRLLSS--*S*TFKNRGKLRLI*KC 155
           N  T  I + +LP +   RDL  QL ++SS   S +F N+GK+  I +C
Sbjct: 477 NYLTNAIGYDLLPSVKNTRDLSIQLSMISSFKVSTSFDNKGKVITIVQC 525


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 15  NIRTKVIKFYVLPYLPK*RDLINQLRLLSS--*S*TFKNRGKLRLI*KC 155
           N  T  I + +LP +   RDL  QL ++SS   S +F N+GK+  I +C
Sbjct: 330 NYLTNAIGYDLLPSVKNARDLPIQLSMISSFKVSTSFDNKGKVITIVQC 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,957
Number of Sequences: 27780
Number of extensions: 262863
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)