Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5837
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 126 2e-29
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 126 2e-29
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 31 0.66
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 31 0.66
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown prote... 30 1.5
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 30 1.5
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 29 2.0
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 29 2.0
Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical... 29 3.5
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ... 28 4.6
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical pr... 28 6.1
U58738-1|AAB00602.1| 290|Caenorhabditis elegans Hypothetical pr... 28 6.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.1
AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box transcr... 28 6.1
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 27 8.1
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 27 8.1
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 27 8.1
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 126 bits (303), Expect = 2e-29
Identities = 61/87 (70%), Positives = 71/87 (81%)
Frame = +3
Query: 357 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAP 536
MA P+IE LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED E++LAP
Sbjct: 1 MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 60
Query: 537 AEDLFDRAKMEDLIKRRFFYDQSFAIY 617
E FDR K+EDL+KRRFFYDQSFAIY
Sbjct: 61 KEASFDRLKLEDLLKRRFFYDQSFAIY 87
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 126 bits (303), Expect = 2e-29
Identities = 61/87 (70%), Positives = 71/87 (81%)
Frame = +3
Query: 357 MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAP 536
MA P+IE LAPLRA VKE GDL+R LK + AP+IDI KAV ELK RK++LED E++LAP
Sbjct: 65 MATPEIEAKLAPLRAAVKEYGDLIRDLKAKGAPKIDIDKAVVELKARKRLLEDTEIALAP 124
Query: 537 AEDLFDRAKMEDLIKRRFFYDQSFAIY 617
E FDR K+EDL+KRRFFYDQSFAIY
Sbjct: 125 KEASFDRLKLEDLLKRRFFYDQSFAIY 151
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 405 VKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAPAEDLFDRAKM 566
V QG+ + EEKA + +IKK ++++ ++++ +D EL ++L ++ K+
Sbjct: 399 VARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKRVQELTEQRKV 452
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 405 VKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAPAEDLFDRAKM 566
V QG+ + EEKA + +IKK ++++ ++++ +D EL ++L ++ K+
Sbjct: 399 VARQGEDSARSMEEKATKEEIKKLKSQVQLQQQLEQDLELQKKRVQELTEQRKV 452
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/47 (27%), Positives = 31/47 (65%)
Frame = +3
Query: 378 EILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDK 518
++ A L + + Q ++ R++++E ++++ +AE K RK++LED+
Sbjct: 405 QMTAALEESTRRQAEMNRQIEDEARKRDELQR-IAEEKKRKQLLEDQ 450
>AF408762-1|AAO27841.1| 242|Caenorhabditis elegans unknown protein
protein.
Length = 242
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 456 EIDIKKAVAELKTRKKILEDKELSLAPAEDLFD 554
E D+K E + ++I+E+ E+ L PAE+L D
Sbjct: 103 EEDVKLEPMEYENSEQIVENAEIKLEPAEELLD 135
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 456 EIDIKKAVAELKTRKKILEDKELSLAPAEDLFD 554
E D+K E + ++I+E+ E+ L PAE+L D
Sbjct: 619 EEDVKLEPMEYENSEQIVENAEIKLEPAEELLD 651
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 291 QQWGSNKLHR-KIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDI 467
+ WG+ ++K F II+ D +EE A+ E D ++ +++EK + D
Sbjct: 304 ESWGAIGFDLWQVKSGTIFDNIIITD-SVEEA----EAHAAETFDKLKTVEKEKKEKADE 358
Query: 468 KKAVAELKTRKKILEDKE 521
+ AE + RKK E+KE
Sbjct: 359 ETRKAEEEARKKAEEEKE 376
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 291 QQWGSNKLHR-KIKIPNPFREIIMADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDI 467
+ WG+ ++K F II+ D +EE A+ E D ++ +++EK + D
Sbjct: 304 ESWGAIGFDLWQVKSGTIFDNIIITD-SVEEA----EAHAAETFDKLKTVEKEKKEKADE 358
Query: 468 KKAVAELKTRKKILEDKE 521
+ AE + RKK E+KE
Sbjct: 359 ETRKAEEEARKKAEEEKE 376
>Z81083-3|CAB03104.1| 559|Caenorhabditis elegans Hypothetical
protein F44F1.4 protein.
Length = 559
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 408 KEQGDLVRKLKE-EKAPEIDIKKAVAELKTRKKILEDKE 521
+E+ V K++E EK + I K++ EL+ KK+LE+K+
Sbjct: 388 EEEQQKVLKIQELEKQKDEQIMKSMLELEDMKKLLEEKD 426
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical protein
F48F5.1 protein.
Length = 1291
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = +3
Query: 306 NKLHRKIKIPNPFREIIMADPKIE--EILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAV 479
N L KIK + R+++ + E E+ A LRA+ +E+ + RK+ E+K E + K+
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRAD-QEKSE-ARKIAEKKKDEQNQKEKE 875
Query: 480 AELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKRRFFYDQ 602
A+L+ ++ E ++++ ++ K +D ++ + DQ
Sbjct: 876 AKLRADQEKSEARKVAEKKKDE--QNQKEKDKLQAKLRADQ 914
>AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical
protein Y46G5A.15 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +3
Query: 369 KIEEI-LAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAE-------LKTRKKILEDKEL 524
++E++ LA LRA + + L+ +EE+ ++++KK E LK L+D E+
Sbjct: 165 ELEDLELAKLRAQIHHEKALMEIEEEERKTKLELKKKSLEFVQKELQLKVEASALKDSEI 224
Query: 525 SLAPAE 542
LA E
Sbjct: 225 KLARME 230
>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
protein R06B10.2 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 4.6
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Frame = +3
Query: 63 KDYKADNIYYVSCRKVDLLTPRGHRPANKIVLSINFESIRIIDLS*MRHV----LSLVYK 230
+DY+ ++ +KVDL T GH P K L + + I+ I S +H+ LS
Sbjct: 485 RDYRDPKLF----KKVDLSTLIGHLPKLKSTLKVLGDYIKGIKTS--KHMETEALSTFTN 538
Query: 231 CSVFSKQVTVFSNHLRLSHSQQWGSNKLHRKIKIPNPFREIIMADPKIEEILAPLRANVK 410
SV S+ V + + +++ Q S + +KI + +I + K ++ N+
Sbjct: 539 ISVGSQVVGMATR--GITNMQMMSSQTV--DLKIVKELKAVIDEEMKKHQLNPSDVKNLN 594
Query: 411 EQGDLVRKLKEEKAPEIDIKKAVAELKTRK 500
L +L K D KK+V +K+ K
Sbjct: 595 SLDGLEDELNRIKTAISDFKKSVKPVKSFK 624
>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
protein F18E2.3 protein.
Length = 1096
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 423 LVRKLKEEKAPEIDIKKAVAELKTRKKILE 512
+VR+ E++ E+D ++ VA +K+ KKI E
Sbjct: 95 MVRRTTTEESAEVDDRELVAAVKSGKKITE 124
>Z29443-9|CAA82575.2| 292|Caenorhabditis elegans Hypothetical
protein T07C4.6 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 413 FFHISSQRSEDFFNLRIGHNDFSKRIRYFNLSMK 312
F +++ +++ +L+I HN F+K R NLS K
Sbjct: 167 FIAVTAYQNQKITDLKIKHNSFAKGFRDGNLSRK 200
>U58738-1|AAB00602.1| 290|Caenorhabditis elegans Hypothetical
protein F31A9.4 protein.
Length = 290
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 405 VKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKI 506
++E G+L L EK PE ++K + E++ K+
Sbjct: 86 IEENGELYDALDAEKVPETALEKQIFEMERNPKL 119
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 375 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKE 521
EEI+A + + + + + EEK + +KK VAE K + + E KE
Sbjct: 15052 EEIVAEKQVDQSQASESTTEAVEEKKTKKVVKKKVAENKGEETLQEVKE 15100
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 375 EEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKE 521
EEI+A + + + + + EEK + +KK VAE K + + E KE
Sbjct: 15052 EEIVAEKQVDQSQASESTTEAVEEKKTKKVVKKKVAENKGEETLQEVKE 15100
>AB019521-1|BAC66463.1| 292|Caenorhabditis elegans T-box
transcription factor TBX-9 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 413 FFHISSQRSEDFFNLRIGHNDFSKRIRYFNLSMK 312
F +++ +++ +L+I HN F+K R NLS K
Sbjct: 167 FIAVTAYQNQKITDLKIKHNSFAKGFRDGNLSRK 200
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 369 KIEEILAPLRANVKEQGDLVRKLKEEK 449
KIE+ILA L+ ++E+ + + KEEK
Sbjct: 336 KIEDILAKLKLRIQERDEALNFRKEEK 362
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 369 KIEEILAPLRANVKEQGDLVRKLKEEK 449
KIE+ILA L+ ++E+ + + KEEK
Sbjct: 336 KIEDILAKLKLRIQERDEALNFRKEEK 362
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 411 EQGDLVRKLKEEKAPEIDIK-KAVAELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKRR 587
E+ +RKL KA E D+K + + + + R K+L ++ ++L + + D AK+E +
Sbjct: 56 ERKKKLRKLLMNKAAE-DLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAIYNDL 114
Query: 588 F 590
F
Sbjct: 115 F 115
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 411 EQGDLVRKLKEEKAPEIDIK-KAVAELKTRKKILEDKELSLAPAEDLFDRAKMEDLIKRR 587
E+ +RKL KA E D+K + + + + R K+L ++ ++L + + D AK+E +
Sbjct: 56 ERKKKLRKLLMNKAAE-DLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAIYNDL 114
Query: 588 F 590
F
Sbjct: 115 F 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,499
Number of Sequences: 27780
Number of extensions: 196722
Number of successful extensions: 760
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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