Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5836
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   1.4  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   4.3  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   5.7  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   7.5  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 437 STH--LRSPPRVLLIWPPTRKPLTLPQLMPLSNTGELI 330
           +TH  + SPP   ++   T +PL+ P ++P SN+  L+
Sbjct: 154 NTHDSVNSPPSYGIMASATNQPLSHPTIVPSSNSSSLL 191


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 428 LRSPPRVLLIWPPTRKPLTLPQLMPL 351
           + SP ++ ++ PP   P +LPQL PL
Sbjct: 83  IASPRQMQVLTPPLSCPESLPQLEPL 108


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 538 SRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRRACCSFGRPRA 383
           S+SP     S  A   P+ P    + S++W   PR   GR+ A  + GR +A
Sbjct: 4   SKSPSEVEKSSSASPAPQKPMI--RVSKQWVVPPRPKPGRKPALDALGRRKA 53


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 258 NTFTASPLVTSRLTLGSSEREEEAN*FTSVAEGHELGQSERLARGRPNEQHARRRPQVCR 437
           NT + S +  + +++ S      AN  +SV    +   S   A+  PN    + +  VC 
Sbjct: 14  NTLSESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAKKDPNAPPQKVKQYVCE 73

Query: 438 GC 443
            C
Sbjct: 74  TC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,416
Number of Sequences: 5004
Number of extensions: 34588
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)