Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5836
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1714 + 28946888-28947118                                         30   1.1  
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566...    29   3.3  
03_04_0155 - 17773121-17773576,17773744-17774322                       28   4.4  
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    28   5.8  
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282...    28   5.8  
02_02_0068 + 6536756-6537253                                           28   5.8  
05_01_0373 + 2922604-2922921                                           27   7.6  
01_06_0993 + 33647301-33647618                                         27   7.6  

>07_03_1714 + 28946888-28947118
          Length = 76

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 301 WGARKGKKRRINSPVLLRGMSWGKVSGLRVGGQMSSTRGGDL 426
           W  R+GKK+R+ +    +G   G+V G+ V G + + RGG L
Sbjct: 31  WSTREGKKKRVTATQQPKGRG-GRVGGVDV-GFVGTWRGGKL 70


>03_05_0327 -
           23154014-23154942,23155169-23155316,23155606-23156622,
           23156753-23157217,23160258-23161247
          Length = 1182

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 186 TSTLKLKVNKRSKERRHLHVILERN 260
           T++LKLK NK+S  ++H H + E N
Sbjct: 851 TNSLKLKQNKKSARQKHHHGVPEGN 875


>03_04_0155 - 17773121-17773576,17773744-17774322
          Length = 344

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 304 GARKGKKRRINSPVLLRGMSWGKVSGLRVGGQMSSTRGGDLRCVEDAGTI 453
           G R G   R    V+ RG   G+V+G   GG+ ++ RGG    V   G +
Sbjct: 15  GRRGGGSARRAKAVVRRG--GGRVAGTSGGGREAARRGGAAAAVRQGGRV 62


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +3

Query: 213 KRSKERRHLHVILERNTFTAS----PLVTSRLTLGSSEREEEAN*FTSVAEGHELGQSER 380
           K S E RHL + LER     S     L   R   GS+E+E E N    +AE     + ER
Sbjct: 634 KSSSENRHLAISLERTMLEVSDAEKELKWLRSATGSAEKEYEIN-QKKIAELKMELERER 692

Query: 381 LARGRPNEQHARRRPQV 431
             R +  E++   + +V
Sbjct: 693 NERIKLEEEYEEVKNEV 709


>05_01_0361 -
           2824728-2826043,2826288-2826507,2827616-2827702,
           2827726-2827980,2828704-2828733
          Length = 635

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 452 MVPA-SSTHLRSPPRVLLIWPPTRKPLTLP 366
           MVP   ST    PP VL ++PP R   T+P
Sbjct: 303 MVPTMGSTGFPPPPTVLHMYPPPRGQFTMP 332


>02_02_0068 + 6536756-6537253
          Length = 165

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 352 RGMSWGKVSGLRVGGQMSSTRGG 420
           RG  WG+  G RVGG   + +GG
Sbjct: 23  RGEQWGEEEGERVGGGARAEKGG 45


>05_01_0373 + 2922604-2922921
          Length = 105

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 537 PAHQSWNGAPSWQSGAPAHQPANIR 463
           PA  +W   P+W+ GAPA     +R
Sbjct: 65  PASATWWRRPTWRGGAPAPMKTTMR 89


>01_06_0993 + 33647301-33647618
          Length = 105

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 537 PAHQSWNGAPSWQSGAPAHQPANIR 463
           PA  +W   P+W+ GAPA     +R
Sbjct: 65  PASATWWRRPTWRGGAPAPMKTTMR 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,190
Number of Sequences: 37544
Number of extensions: 266394
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)