Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5836
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    31   0.56 
Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   6.9  
AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 284 YEPAHFGELGKGRRGELIHQCC 349
           Y+P  F ELG G+R  + H+CC
Sbjct: 330 YDPIAFSELGIGKRTVIRHECC 351


>Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical
           protein K01H12.4 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 139 YKTTSYSMNFCTYLKYRFVCMRN*RIKLYGMENEKKKKKNS 17
           Y +T+   N   Y    FV     R+KL+    EK+KKKNS
Sbjct: 218 YASTTAKSNSLAYQPMEFVSSDG-RVKLWLQPLEKQKKKNS 257


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
            protein Y54G2A.21 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +3

Query: 210  NKRSKERRHLHVILE---RNTFTASPLVTSRLTLGSSEREEEAN*FTSVAEGHELGQSER 380
            N R K+RR++HV+ E   RN      + TS    G S  +   N  TS+A G   G S +
Sbjct: 810  NYRDKKRRYIHVLRELMCRNIMNDMTMNTS--IPGLSIPDFSQNVQTSIAFG---GNSTK 864

Query: 381  LA-RGRPNEQHARRRP 425
            +  RG P+   +R  P
Sbjct: 865  IGFRGLPSNALSRPNP 880


>AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical
           protein F29C4.6 protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 516 GAPSWQSGAPAHQPANIRLANDGS 445
           G P  QSG+    PA IR A DG+
Sbjct: 6   GPPPCQSGSGCSNPAKIRKAKDGA 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,620,854
Number of Sequences: 27780
Number of extensions: 207012
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)