Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5832
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    30   0.24 
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   3.9  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   3.9  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.0  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.0  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 46  RSDLFCHNRNLF--VETSESISFSVNDKEAYFSNATMYLIKKYISSY 180
           +S+++  NRNL   ++T E IS  V DKE YFS+    LI+  I  Y
Sbjct: 375 QSEIYSTNRNLLSVLQTVEQISKEV-DKE-YFSSTNHQLIRSEIGEY 419


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 40  TSRSDLFCHNRNLFVETSESISFSVNDKEAYFSNATMYLIKKYI 171
           T+RS +     +  +   + +SFSVN      + + +Y++ KY+
Sbjct: 191 TNRSRIIKETSSYLLSQEDQLSFSVNSNGFTNACSVLYMLDKYL 234


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 88  TSESISFSVNDKEAYFSNATMYLIKKYISSYFLLTGNGPI 207
           TS SIS   +   AY SNA    I  Y+SS     GN  I
Sbjct: 127 TSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSSI 166


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 472 ILMISLAF*ELRSFSFLILYSKCLIFLKVIICRCPI 579
           +L +SL +  L     +  +S  L+FLK +IC C +
Sbjct: 366 MLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMV 401


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 278 NCFFFLQRNQYFVMVISVFEN 216
           +CFFFL+  Q    +I VF++
Sbjct: 84  DCFFFLKEQQTLKFIIIVFQS 104


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 423 YVTKYAVKCKKINK 464
           Y  KYAVKCKK  K
Sbjct: 370 YDNKYAVKCKKCRK 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,240
Number of Sequences: 5004
Number of extensions: 49227
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)