Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5832
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1687 - 28673491-28674822                                         28   7.0  
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    28   7.0  

>07_03_1687 - 28673491-28674822
          Length = 443

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  HNRNLFVETSESISFSVNDKEAYFSNATMYLIKKYIS 174
           H RN   ETSES++  + DKE       M  IK+ IS
Sbjct: 29  HARN--TETSESVAIKMIDKEKVLKGGLMDQIKREIS 63


>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 628 QNILLNSNIFRLKALSQWDIDILLLLKRLGIYYII*ETRNFLIPKKLS*SSKYQILFIFL 449
           QNI  + NIF    L+Q  I I +LL  L +Y+++   R +    KL   S  +I++ + 
Sbjct: 202 QNIRWSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKY----KLFEPSGLKIIYRYK 257

Query: 448 HFTAY-FVT*NIR 413
            +    F+  N+R
Sbjct: 258 KYNYLGFIAGNVR 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,735
Number of Sequences: 37544
Number of extensions: 223283
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)