Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5832
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.15 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 242 QNIDFVVKKKNNFTNVIKVFRI--SVSHKNVISFRPIILSV 358
           + +D++++K  NF+ ++  FR    + H  + +F P  L V
Sbjct: 174 ETVDYMLEKSGNFSRLVVFFRFERQIGHHLIQTFAPSTLVV 214


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 AFSLHFILEISRMFYVTKYAVKCKKIN 461
           AF+   ++ +   F  T+Y   C+++N
Sbjct: 14  AFTYEQLVALENKFKTTRYLSVCERLN 40


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 103 SFSVNDKEAYFSNAT 147
           +F VN+K++YF  AT
Sbjct: 98  TFFVNEKQSYFHIAT 112


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 103 SFSVNDKEAYFSNAT 147
           +F VN+K++YF  AT
Sbjct: 98  TFFVNEKQSYFHIAT 112


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 236 PSQNIDFVVKKKNNFTNVIKVF 301
           P      V+KK  NF +V+K++
Sbjct: 63  PDAMFSQVLKKAENFKDVVKIW 84


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 103 SFSVNDKEAYFSNAT 147
           +F VN+K++YF  AT
Sbjct: 37  TFFVNEKQSYFHIAT 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,231
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)