Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5831
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.2  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   6.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.1  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 309 GRMYLAQVTSWKALASVVRCKIRFH 383
           GR  L  +T W  +A+++ C + FH
Sbjct: 399 GRRILLLLTVWGMIAALIVCAVAFH 423


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 514 NDIAGLLCCICFAIVYWVAIFI 579
           N ++ ++  I F +VYW+ IFI
Sbjct: 274 NYVSFMVGSIIFLVVYWIGIFI 295


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 570  SYPIDNGKTNATKETSNIIETGEIRKTGNVASTSFSL*MTSQDY 439
            SY    G T+ +++        + RKT   A+TSF   M  Q+Y
Sbjct: 1284 SYRHKRGSTSYSRKRKYSTSQKDSRKTSKSANTSFIHPMVKQNY 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,556
Number of Sequences: 5004
Number of extensions: 41631
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)