Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5831
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    31   0.58 
11_06_0701 + 26407055-26407597,26407794-26409644                       28   5.4  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    27   9.4  

>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
 Frame = -2

Query: 555 NGK--TNATKETSNIIETGEIRKTGNVASTSF 466
           NGK  + AT++TSN+ E+ E+  +GNV+S+ F
Sbjct: 98  NGKLSSEATEQTSNVEESSEVDFSGNVSSSVF 129


>11_06_0701 + 26407055-26407597,26407794-26409644
          Length = 797

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 576 KNSYPIDNGKTNATKETSNIIETGEIRK 493
           KN+ P D G T+  ++TS+I+E   + K
Sbjct: 145 KNAQPADKGSTSELRKTSHIVEPNLVGK 172


>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 474 LMRRCQFYVFPPFQ*YCWSPLLHLFCH 554
           L+ +C F+VFPP +   ++P  H   H
Sbjct: 227 LVPKCLFHVFPPLKYLLYTPSFHSLHH 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,959
Number of Sequences: 37544
Number of extensions: 252809
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)