Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5831
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 RFNDIAGLLCCICFAIVYWV 567
           +++ I   +C +CF ++YW+
Sbjct: 406 KYSRIVFPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 RFNDIAGLLCCICFAIVYWV 567
           +++ I   +C +CF ++YW+
Sbjct: 406 KYSRIVFPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 RFNDIAGLLCCICFAIVYWV 567
           +++ I   +C +CF ++YW+
Sbjct: 344 KYSRIVFPVCFVCFNLMYWI 363


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +1

Query: 538 CICFAIVYWVAIFINR 585
           C+   ++ WV+ ++NR
Sbjct: 224 CVLLVVLSWVSFWLNR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,895
Number of Sequences: 438
Number of extensions: 2789
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)