Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5828
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   1.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   4.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   4.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   4.2  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   7.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    24   9.6  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -1

Query: 426 HMFDNGVGLGNVHFHGV-GDF------LFYRVGDVLFDGVGNRNFLNDSY 298
           ++F   + LG     GV GDF      L  +VGD  F  VGN N LN +Y
Sbjct: 11  YLFTRLLQLGIKSILGVPGDFNLALLDLIEKVGDETFRWVGNENELNGAY 60


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 444  SLNWVRHMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGVGNRNFLND 304
            SL+W +H+    +     HF  +G +LF+R+    F  +   NF +D
Sbjct: 1592 SLSWKQHIATKMIQ----HFLAIGSWLFHRIQLSRFSDIPLCNFESD 1634


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 441 LNWVRHMFDNGVGLGNVHFHGV 376
           L+W RH+  +G   G +H H V
Sbjct: 269 LSWNRHVLSSGSRSGAIHHHDV 290


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 366 LFYRVGDVLFDGVGNRNFLNDSY 298
           L  +VGD  F  VGN N LN +Y
Sbjct: 37  LIEKVGDEKFRWVGNTNELNGAY 59


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 389 CTFPNPTPLSNMC 427
           C FPNPTP+   C
Sbjct: 186 CMFPNPTPVVASC 198


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 351 LPGRKENPLPRESARSPTLPRCQTCALPSLKRL 449
           +P    + LP     +P+ PR    A+P LK L
Sbjct: 231 MPSPPSSALPVSLVSAPSPPRATNVAVPCLKHL 263


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 351 GDVLFDGVGNRNFLNDSYGFVEFL 280
           G   FDG    N  + ++GFV++L
Sbjct: 137 GTTFFDGFDFMNITDPTHGFVQYL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,318
Number of Sequences: 5004
Number of extensions: 15055
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)