Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5828
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   7.2  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    27   9.5  

>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 315 SSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQ 419
           +S S P+RK    PGRK  P P  S  +   P  +
Sbjct: 7   ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAE 41


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 330 PRRKAHPLPGRKENPLPRESARSPTLPR 413
           PRR A P  GR  +P P  S RSP  PR
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PR 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,408
Number of Sequences: 37544
Number of extensions: 127691
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)