Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5827
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.65
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.65
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 27 2.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 3.5
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 4.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.1
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 25 8.1
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.65
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -1
Query: 287 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLPE 108
TG+TWST + +NL+A+K S SAN PP S+ K P
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSNDFWKDSNEPA 326
Query: 107 P 105
P
Sbjct: 327 P 327
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.65
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 305 ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSV 135
+++ S T ++ S + P + S + T + GS D+A+++ W S +TSSV
Sbjct: 883 SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSV 941
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 209 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 69
SP SDT S N+ LSP + S R +P R + ++N + A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 222 GHEGKPGLRHGLGERL 175
G EGKPG+ G+GE L
Sbjct: 72 GTEGKPGVSRGVGEEL 87
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 397 PAHYRGDLVRVPLLRDTYWEFHMD--SVNVNASRFCAQGCSAIADTGTSLIAGPXKEVEA 570
P G + L+ D YW H+D SV + + A+ C AI T +++ +++ A
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFA 323
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.6
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 326 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 159
T TSP +T S+T V+W +T I + ++ S ++ T + S T +++ T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661
Query: 158 PPTVTSS 138
T TSS
Sbjct: 662 SSTATSS 668
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 245 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 135
PR+ A++K + S TAS ++SP + SSV
Sbjct: 96 PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 326 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 147
T TS +T L++ T ST++ A S++ T + + +SAN T + T
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440
Query: 146 TSSV 135
SSV
Sbjct: 441 LSSV 444
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 174 PDVRRGRVGARACLRGR-QVRRDPRDGLQHYRSGPCDPGVRQHGG 305
P + G++ + A + + DP+ + RS C+PGV + G
Sbjct: 214 PSLAGGKMSSSAAANAKIDILDDPKTVNKKIRSAFCEPGVVEENG 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,597
Number of Sequences: 5004
Number of extensions: 33743
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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