Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5827
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.54 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.95 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 282 GHMVHCDSAEGHPEDPV 232
           GHM H  +  GHP  P+
Sbjct: 120 GHMGHTPTPNGHPSTPI 136


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 242 RIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 138
           R  S   + KA PGS  A +   ++ LSP  + SS
Sbjct: 886 RPASQATSVKAEPGSIMAMSESSKKVLSPGELLSS 920


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 293 SNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVE 132
           S+ G   + A  L +  R  S  +   AS  S TAS+    R+   P+V+ S E
Sbjct: 154 SSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDE 207


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 DGILGMAFSTIAVDHVTPVF 291
           +GI GM+ S IAV+    +F
Sbjct: 256 EGIFGMSLSPIAVNGYRTLF 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,194
Number of Sequences: 438
Number of extensions: 2572
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)