Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5824
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   6.2  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 FFCRSSCLASTNGPYTQPVYTEREVC 184
           FF   +C A  N P++  + TER +C
Sbjct: 49  FFRNGTCTAGENCPFSHSLETERPIC 74


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 119 SSCLASTNGPYTQPV-YTEREVCSGALTISSLTPIFSLLMERVICELKLS 265
           S+ LA+TN   +  V YT   V S   TISS TP+ S  +    C    S
Sbjct: 547 STPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTS 596



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 119 SSCLASTNGPYTQPVYTEREVCSGALTISSLTPIFSLLMERVICELKLS 265
           ++C  ST+ PYT    T     S   TISS TP+ S  +    C    S
Sbjct: 494 TNCTTSTSVPYTSTPVT-----SSNYTISSSTPVTSTPVTTTNCTTSTS 537


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 234 ISNENIGVRLLIVSAPEHTSRSVYTGCVYGPF-VEARQLLRQK 109
           +SNE I VRL  + APE    S + G    P+ +EA++ L  K
Sbjct: 96  LSNETISVRLAGIDAPE----SAHFGKQEQPYALEAKEFLHNK 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,258
Number of Sequences: 5004
Number of extensions: 61785
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)