Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5824
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     31   0.92 
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741...    31   0.92 

>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +3

Query: 285 NINQQRLITLSNFRPKILRSLFFNPFYSFSYIFLPFVNLGLYRELPDIHVL 437
           NI+   L+T+     K LRSL  N  Y     F P ++   ++ELP IHVL
Sbjct: 585 NISCTELVTICTQNKK-LRSLVCNESYKSIKQFAPVIDCW-FKELPSIHVL 633


>01_01_0940 +
           7417035-7417124,7417989-7418051,7418632-7418736,
           7419066-7419097,7419173-7419317,7419760-7419945,
           7420134-7420224,7420333-7421021
          Length = 466

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 270 SDDNFNSHITRSISNENIGVRLLIVSA--PEHTSRSVYTGCVYGPFVEARQLLRQKKLTI 97
           SD   +     S SN NI V  L++    P+H  R+ Y  C        R LLRQ  LT+
Sbjct: 279 SDSEMSFDDVMSYSNFNIVVDGLVIDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTL 338

Query: 96  FI 91
            +
Sbjct: 339 VV 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,380
Number of Sequences: 37544
Number of extensions: 343487
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)