Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5822
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 258 4e-70
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 257 5e-70
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 257 5e-70
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 142 3e-35
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 141 4e-35
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 83 2e-17
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 56 2e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 47 1e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 47 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 46 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 4e-06
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.001
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.020
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.026
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.081
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.19
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.43
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 3.0
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 7.0
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 7.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 7.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 7.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 9.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.3
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 258 bits (631), Expect = 4e-70
Identities = 118/133 (88%), Positives = 126/133 (94%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 407 GQFQAGITDNGQT 445
G+F+AGI+ +GQT
Sbjct: 121 GEFEAGISKDGQT 133
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 257 bits (630), Expect = 5e-70
Identities = 117/133 (87%), Positives = 126/133 (94%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 407 GQFQAGITDNGQT 445
G+F+AGI+ +GQT
Sbjct: 121 GEFEAGISKDGQT 133
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 257 bits (630), Expect = 5e-70
Identities = 117/133 (87%), Positives = 126/133 (94%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 407 GQFQAGITDNGQT 445
G+F+AGI+ +GQT
Sbjct: 121 GEFEAGISKDGQT 133
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 142 bits (343), Expect = 3e-35
Identities = 62/129 (48%), Positives = 89/129 (68%)
Frame = +2
Query: 59 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 238
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 239 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGTGQFQ 418
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++ G+F+
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 419 AGITDNGQT 445
AG GQT
Sbjct: 356 AGFERGGQT 364
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 141 bits (342), Expect = 4e-35
Identities = 66/141 (46%), Positives = 90/141 (63%)
Frame = +2
Query: 23 IAQP*STKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG 202
++ P + K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKG
Sbjct: 163 VSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKG 222
Query: 203 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 382
SF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD A
Sbjct: 223 SFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 383 VLIVATGTGQFQAGITDNGQT 445
VL+V + F+ G +NGQT
Sbjct: 283 VLVVDSSQNNFERGFLENGQT 303
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 83.0 bits (196), Expect = 2e-17
Identities = 47/120 (39%), Positives = 67/120 (55%)
Frame = +2
Query: 53 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 232
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 233 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGTGQ 412
E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+ GQ
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 56.0 bits (129), Expect = 2e-09
Identities = 37/113 (32%), Positives = 53/113 (46%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 250
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 251 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGTG 409
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 47.2 bits (107), Expect = 1e-06
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 217
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 218 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 397
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Query: 398 TGTG 409
T G
Sbjct: 131 TIEG 134
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 47.2 bits (107), Expect = 1e-06
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +2
Query: 47 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 217
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 218 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 397
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVD 130
Query: 398 TGTG 409
T G
Sbjct: 131 TIEG 134
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 46.0 bits (104), Expect = 3e-06
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 250
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 251 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGTG 409
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 45.6 bits (103), Expect = 4e-06
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 250
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 251 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 373
+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 374 DCAVLIVATGTGQFQAGITDNGQ 442
D AVL++ +G IT + Q
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQ 192
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.3 bits (75), Expect(2) = 0.001
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 194 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 367
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 368 QADCAVLIVATGTG 409
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.001
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 74 IVVIGHVDSGKST 112
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 33.1 bits (72), Expect = 0.020
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +2
Query: 80 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 253
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 254 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 394
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 32.7 bits (71), Expect = 0.026
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 241
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 242 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVATGTGQFQA 421
I K Y + +ID+PGH DF + + + D A ++V G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQ 134
Query: 422 GIT 430
IT
Sbjct: 135 TIT 137
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.081
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 302 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 397
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 227 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 349
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.43
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 250
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 251 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 394
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 84 SAMWTLESPLLPAISSTSAAALINVQSR 167
S +W L S +P I TS +L +QSR
Sbjct: 1204 SGVWALISRWIPFIPKTSFPSLAEIQSR 1231
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 258 IPRSRSAFSLSNTQAYLKEPLPIS*ASFSNFSIVRLSMPPH 136
IP+ A S+ N++ + ++ LP S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 99 LESPLLPAISSTSAAALINVQSRSLRKKLKRWARAPS 209
L+ L P + +T+ ++++ SLR W R+ S
Sbjct: 498 LDPELFPYVRNTTPQTEVSMEQTSLRSSRPSWTRSRS 534
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 112 SGLSRVHMADDDDVDMSLLFTHLCGS 35
SGLS VH D D + T+ CG+
Sbjct: 417 SGLSTVHFQDFFFADQMVSLTYACGN 442
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 6 LNGSHILRNLDPQRWVKRRLISTSSSSAMWTLESPLLP 119
L +++ NLD + KR S + +T E+PLLP
Sbjct: 293 LMSDNLVPNLDFMQGAKRLASCPSDIISSFTYENPLLP 330
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 74 IVVIGHVDSGKSTTTGHLIYKC 139
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 77 VVIGHVDSGKSTTTGHLIYKCG 142
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,135
Number of Sequences: 5004
Number of extensions: 40683
Number of successful extensions: 167
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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