Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5821
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    34   0.004
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   3.3  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    23   7.7  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 34.3 bits (75), Expect = 0.004
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 1   LLEIDNSELLHMLEHAESLKAKVDEAVAVL 90
           LLE+ NSELL +LE   +L  +V+EA+ VL
Sbjct: 612 LLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 135 IRKASWHQ-EVVSCFNSVTLLSICFIFFD 218
           + K S H+ E ++C ++  L+++C IF D
Sbjct: 532 LMKLSTHKNERIACLSASQLITVCHIFSD 560


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 84  SNSFIYFSFQRLCM 43
           SN  +YF+F++LC+
Sbjct: 207 SNLLVYFNFKKLCV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,818
Number of Sequences: 5004
Number of extensions: 9078
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)