Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5820
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0601 - 5268520-5271112,5272448-5272950                           28   4.6  
12_02_0809 + 23351784-23352035,23352219-23352386,23353160-233532...    28   6.1  
02_05_0940 - 32934214-32934906,32936049-32936185,32936281-329364...    27   8.1  

>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 141 KLICAER-HLDVFNFVKSLSEFEVEYNKVTIAVYREVK 251
           KL CA + H   +    SL+E E+E N V I  Y E+K
Sbjct: 153 KLPCASKPHRKKYTDWSSLTELEIEDNLVKIGDYDEIK 190


>12_02_0809 +
           23351784-23352035,23352219-23352386,23353160-23353230,
           23353444-23353501,23354117-23354296,23354919-23355003,
           23355091-23355150,23355410-23355483,23355582-23355698
          Length = 354

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 499 LGPKFATFTALDHKRLFCL---SDILEILQESHLKFKIWKK 386
           +GPKF      +H  +F     ++ +E+L  SHLK ++W++
Sbjct: 255 IGPKF------EHHEMFPARTNTEFVEVLSRSHLKMRVWER 289


>02_05_0940 -
           32934214-32934906,32936049-32936185,32936281-32936416,
           32936503-32936886
          Length = 449

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 140 RLRASTQRLRGPTTRDINQSLSRVNLTAVTL 48
           R+R++T RLR  +  D++++L++  L A TL
Sbjct: 38  RMRSATGRLRSLSLEDLSRTLAQSGLQAFTL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,961
Number of Sequences: 37544
Number of extensions: 212640
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)