Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5820
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78410-10|CAB01640.2|  337|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z78410-10|CAB01640.2|  337|Caenorhabditis elegans Hypothetical
           protein C51E3.3 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 114 KRSNNP*H*SITVTCQSDSCHIASLAPF 31
           KR  +P +  ITVTC +D+ HI+   PF
Sbjct: 38  KRFRSPCYILITVTCVADAIHISGQFPF 65


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -1

Query: 460 KRLFCLSDILEILQESHLKFKIWKKYLNEKKSSS 359
           K LFC+ DIL  +    L FKI +K LNE KS +
Sbjct: 92  KILFCIFDILVAI----LYFKIMEKDLNETKSET 121


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 538 HVYLCLNSVGTFLLGPKFATFTALDHKRLFCLSDILEILQESHLKFKI 395
           +VY  +  +  F +  +F+ F  L+H  +  + D L+    + LKF +
Sbjct: 7   NVYFIMEEIEIFDIFQRFSVFLKLEHYEMLKMGDFLKNELPNGLKFPV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,747
Number of Sequences: 27780
Number of extensions: 225043
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)