Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5820
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 284 YKDKCRLNKITFHLSIHCNSHFIIF 210
           YKDK  L  +   L + C  +F+I+
Sbjct: 146 YKDKTILYMVKLTLKLSCAMNFLIY 170


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 211 STSNSDRDFTKLKTSKCLSAQISFV*ERQLNV*EVQQPVTL 89
           STS S R  +    +  LS   S + E Q+++ + QQP+ L
Sbjct: 837 STSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNL 877


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 107 PTTRDINQSLSRVNLTAVT 51
           PTT++IN+   R+ L  +T
Sbjct: 87  PTTQEINKPFKRLELFNIT 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,830
Number of Sequences: 438
Number of extensions: 2787
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)