Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5819
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   200   6e-53
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   190   6e-50
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   102   3e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    93   2e-20
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   2.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   3.9  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   5.1  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   6.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   6.7  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        24   8.9  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  200 bits (489), Expect = 6e-53
 Identities = 87/118 (73%), Positives = 100/118 (84%)
 Frame = +3

Query: 84  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 263
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 264 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 437
           +VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV 118


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  190 bits (464), Expect = 6e-50
 Identities = 87/123 (70%), Positives = 101/123 (82%), Gaps = 5/123 (4%)
 Frame = +3

Query: 84  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 248
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 249 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 428
           TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119

Query: 429 DLV 437
           D V
Sbjct: 120 DSV 122


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  102 bits (244), Expect = 3e-23
 Identities = 49/118 (41%), Positives = 67/118 (56%)
 Frame = +3

Query: 84  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 263
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 264 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 437
           +VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D V
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 92.7 bits (220), Expect = 2e-20
 Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
 Frame = +3

Query: 87  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 266
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 267 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGH---YTIGKEIVD 431
           +PRA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G+     I ++I+D
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDIMD 120

Query: 432 LV 437
           ++
Sbjct: 121 MI 122


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 163 STASSLMARCPQTRPSGVETILSTLSSARPELAST 267
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 182 WPDAHRQDHRGWRRFFQHFLQR 247
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 73  LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 195
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 137 ITDLDSGLANVYRDALTHFDLSF 69
           +T +D GLA  YRD  TH  + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 191 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 69
           H  I+ D  L  + K    +  +D GLA  YRD  TH  + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 369 KEDAANNYARGHYTIGKEIVDLV 437
           +E  ANN+ RGH  I K+  D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -1

Query: 259 PAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPIWTPAWPTCTEMHS 89
           P P+ LK +  E  P    L V IW     P  +       +PI TPA+P+    H+
Sbjct: 268 PQPILLKPI--EDGP----LQVRIWNPKLYPSDKA----HRMPIITPAYPSMCATHN 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,557
Number of Sequences: 5004
Number of extensions: 37369
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)